Cell Segmentation Beyond 2D—A Review of the State‐of‐the‐Art
Cell segmentation underpins many biological image analysis tasks, yet most deep learning methods remain limited to 2D despite the inherently 3D nature of cellular processes. This review surveys segmentation approaches beyond 2D, comparing 2.5D and fully 3D methods, analyzing 31 models and 32 volumetric datasets, and introducing a unified reference ...
Fabian Schmeisser +6 more
wiley +1 more source
Transfer Entropy in Graph Convolutional Neural Networks
Graph Convolutional Networks (GCN) are Graph Neural Networks where the convolutions are applied over a graph. In contrast to Convolutional Neural Networks, GCN’s are designed to perform inference on graphs, where the number of nodes can vary, and the ...
Moldovan, Adrian +2 more
core +2 more sources
MVHGCN: Predicting circRNA-disease associations with multi-view heterogeneous graph convolutional neural networks. [PDF]
Miao Y +5 more
europepmc +1 more source
Majority‐Voting Overlapping Method for Error Correction in DNA Data Storage
We propose an overlapping‐based majority‐voting method for DNA data storage error correction. By aligning multiple reads and choosing the most frequent base per position, it suppresses substitution errors without prior models. Validated on synthetic and real sequencing data, it achieves high‐fidelity, scalable, and cost‐effective reconstruction ...
Thi Bich Ngoc Nguyen +5 more
wiley +1 more source
Graph convolutional neural networks improved target-specific scoring functions for cGAS and kRAS in virtual screening. [PDF]
Wang B, Junaid M, Li W.
europepmc +1 more source
Estimating Tissue Microstructure with Undersampled Diffusion Data via Graph Convolutional Neural Networks. [PDF]
Chen G +9 more
europepmc +1 more source
Explaining the Origin of Negative Poisson's Ratio in Amorphous Networks With Machine Learning
This review summarizes how machine learning (ML) breaks the “vicious cycle” in designing auxetic amorphous networks. By transitioning from traditional “black‐box” optimization to an interpretable “AI‐Physics” closed‐loop paradigm, ML is shown to not only discover highly optimized structures—such as all‐convex polygon networks—but also unveil hidden ...
Shengyu Lu, Xiangying Shen
wiley +1 more source
Inferred global dense residue transition graphs from primary structure sequences enable protein interaction prediction via directed graph convolutional neural networks. [PDF]
Ebeid IA, Tang H, Gu P.
europepmc +1 more source
Composition‐Aware Cross‐Sectional Integration for Spatial Transcriptomics
Multi‐section spatial transcriptomics demands coherent cell‐type deconvolution, domain detection, and batch correction, yet existing pipelines treat these tasks separately. FUSION unifies them within a composition‐aware latent framework, modeling reads as cell‐type–specific topics and clustering in embedding space.
Qishi Dong +5 more
wiley +1 more source
Harnessing Machine Learning to Understand and Design Disordered Solids
This review maps the dynamic evolution of machine learning in disordered solids, from structural representations to generative modeling. It explores how deep learning and model explainability transform property prediction into profound physical insight.
Muchen Wang, Yue Fan
wiley +1 more source

