Results 301 to 310 of about 8,462,270 (351)

A cautionary tale of batch corrections on confounded microbiome community profiles

iMetaOmics, EarlyView.
We use a case study of seed microbiomes to assess the performance of five batch effects correction algorithms (BECAs) (zero‐mean centering (ZMC), Ratio‐A, conditional quantile regression (ConQuR), partial least squares discriminant analysis (PLSDA), and weighted PLSDA on a confounded data set in which the covariate of interest (plant species) does not ...
Alicia J. Foxx, Adam R. Rivers
wiley   +1 more source

MUSiCC: Towards an accurate estimation of average genomic copy-numbers in the human microbiome

, 2014
Ohad Manor, Elhanan Borenstein
openalex   +1 more source

The impact of a high‐fat diet on liver health in pregnant mice and their offspring: The role of the gut‐liver axis

iMetaOmics, EarlyView.
The study investigated the longitudinal effects of normal and high‐fat diet, showing their differential effects on gut microbiota diversity and gut metabolites, with the latter having a significant impact on increasing liver inflammation and gut microbiota and metabolites disruption.
Qian Gong, Yufei Zhang, Juxiong Liu, Shuai Yuan, Huijie Hu, Yu Cao, Shoupeng Fu, Wenjin Guo   +7 more
wiley   +1 more source

Race and indigeneity in human microbiome science: microbiomisation and the historiality of otherness. [PDF]

Hist Philos Life Sci
Núñez Casal A.
europepmc   +1 more source

Longitudinal profiling of the human gut microbiome reveals temporal and personalized responses to inulin

iMetaOmics, EarlyView.
This study monitored gut microbiome changes in healthy volunteers following inulin intervention, revealing dynamic and highly individualized shifts in microbial composition and short‐chain fatty acid production. Using in vitro batch cultures, correlation analysis, and predictive modeling, we explored the personalized microbiome response.
Lu Wu, Hong‐Bin Liu, Xu‐Wen Wang, Zi‐Ning Tao, Ze‐Peng Qu, Chao‐Bi Lei, Yang‐Yu Liu, Lei Dai   +7 more
wiley   +1 more source

Exploring the role of the human microbiome in forensic identification: opportunities and challenges. [PDF]

Int J Legal Med
Franceschetti L, Lodetti G, Blandino A, Amadasi A, Bugelli V.   +4 more
europepmc   +1 more source

Microbiota humanization drives human‐like metabolic and immune transcriptomic shifts in pigs

iMetaOmics, EarlyView.
This study successfully established gut microbiota‐humanized pigs, achieved human‐like remodeling of the serum metabolome, and uncovered transcriptional alterations in immune cell subsets. These findings advance our understanding of how human gastrointestinal microorganisms affect host metabolism and the immune function in a porcine model.
Zhaoqi Zhang, Yanan Xu, Kun Pang, Changhong Wu, Chenxu Zhao, Tong Lei, Jiayu Zhang, Tang Hai, Fangqing Zhao, Yong Zhao   +9 more
wiley   +1 more source

Zoonotic bacteria in the vicinity of animal farms as a factor disturbing the human microbiome: a review. [PDF]

Int J Occup Med Environ Health
Kozajda A, Miśkiewicz E, Jeżak K.
europepmc   +1 more source

BioMGCore: A toolkit for detection of biological metabolites in microbiome

iMetaOmics, EarlyView.
The keyword matching and gene proximity principles were used to accurately identify core gene clusters in microbial genomes. The metabolic gene clusters can be classified into different taxonomic groups according to Domain, Phylum, Class, Order, Family, Genus, and Species. BioMGCore can achieve batch statistics for secondary metabolites prediction.
Guang Yang, Guohao Yu, Qian Cui, Xueping Huang, Kexin Guo, Shulei Jia   +5 more
wiley   +1 more source

Prophages: an integral but understudied component of the human microbiome. [PDF]

Microb Genom
Inglis LK, Roach MJ, Edwards RA.
europepmc   +1 more source