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Graph Neural Network for Protein–Protein Interaction Prediction: A Comparative Study

open access: yesMolecules, 2022
Proteins are the fundamental biological macromolecules which underline practically all biological activities. Protein–protein interactions (PPIs), as they are known, are how proteins interact with other proteins in their environment to perform biological
Hang Zhou   +4 more
doaj   +1 more source

Curve graphs for Artin–Tits groups of type B, A∼ and C∼ are hyperbolic

open access: yesTransactions of the London Mathematical Society, 2021
The graph of irreducible parabolic subgroups is a combinatorial object associated to an Artin–Tits group A defined so as to coincide with the curve graph of the (n+1)‐times punctured disk when A is Artin's braid group on (n+1) strands.
Matthieu Calvez   +1 more
doaj   +1 more source

Eccentricity terrain of δ-hyperbolic graphs [PDF]

open access: yesJournal of Computer and System Sciences, 2020
22 pages, 4 ...
Dragan, Feodor F., Guarnera, Heather M.
openaire   +2 more sources

Graph Representation Learning Method Based on Neural Ranking with Embedded Hyperbolic Layer [PDF]

open access: yesJisuanji gongcheng, 2020
To address the high complexity of existing graph representation learning methods,this paper proposes a new graph representation learning method to improve the learning efficiency while maintaining the representation performance of graph features.The ...
TANG Suqin, LIU Xiaomei, YUAN Lei
doaj   +1 more source

Hyperbolic graph generator [PDF]

open access: yesComputer Physics Communications, 2015
Networks representing many complex systems in nature and society share some common structural properties like heterogeneous degree distributions and strong clustering. Recent research on network geometry has shown that those real networks can be adequately modeled as random geometric graphs in hyperbolic spaces.
Rodrigo Aldecoa   +2 more
openaire   +2 more sources

A Hyperbolic-to-Hyperbolic Graph Convolutional Network [PDF]

open access: yes2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2021
CVPR2021 ...
Dai, Jindou   +3 more
openaire   +2 more sources

Hyperbolicity on Graph Operators [PDF]

open access: yesSymmetry, 2018
A graph operator is a mapping F : Γ → Γ ′ , where Γ and Γ ′ are families of graphs. The different kinds of graph operators are an important topic in Discrete Mathematics and its applications. The symmetry of this operations allows us to prove inequalities relating the hyperbolicity constants of a graph G and its graph operators ...
J. A. Méndez-Bermúdez   +3 more
openaire   +2 more sources

Sur l'hyperbolicit\'e de graphes associ\'es au groupe de Cremona [PDF]

open access: yesÉpijournal de Géométrie Algébrique, 2019
To reinforce the analogy between the mapping class group and the Cremona group of rank $2$ over an algebraic closed field, we look for a graph analoguous to the curve graph and such that the Cremona group acts on it non-trivially.
Anne Lonjou
doaj   +1 more source

Knowledge Graph Completion Based on Entity Descriptions in Hyperbolic Space

open access: yesApplied Sciences, 2022
Hyperbolic space has received extensive attention because it can accurately and concisely represent hierarchical data. Currently, for knowledge graph completion tasks, the introduction of exogenous information of entities can enrich the knowledge ...
Xiaoming Zhang   +2 more
doaj   +1 more source

Uniformizing surfaces via discrete harmonic maps [PDF]

open access: yes, 2020
We show that for any closed surface of genus greater than one and for any finite weighted graph filling the surface, there exists a hyperbolic metric which realizes the least Dirichlet energy harmonic embedding of the graph among a fixed homotopy class ...
Kajigaya, Toru, Tanaka, Ryokichi
core   +3 more sources

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