Results 41 to 50 of about 5,865 (183)

Molecular hypergraph neural networks

The Journal of Chemical Physics
Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher order connections, such as multi-center bonds and conjugated structures.
Junwu Chen, Philippe Schwaller
openaire   +3 more sources

Leveraging Artificial Intelligence and Large Language Models for Cancer Immunotherapy

Advanced Science, EarlyView.
Cancer immunotherapy faces challenges in predicting treatment responses and understanding resistance mechanisms. Artificial intelligence (AI) and machine learning (ML) offer powerful solutions for cancer immunotherapy in patient stratification, biomarker discovery, treatment strategy optimization, and foundation model development.
Xinchao Wu, Mengtao Sun, Lusheng Li, Jieqiong Wang, Shibiao Wan   +4 more
wiley   +1 more source

Interpretability and Representability of Commutative Algebra, Algebraic Topology, and Topological Spectral Theory for Real‐World Data

Advanced Intelligent Discovery, EarlyView.
This article investigates how persistent homology, persistent Laplacians, and persistent commutative algebra reveal complementary geometric, topological, and algebraic invariants or signatures of real‐world data. By analyzing shapes, synthetic complexes, fullerenes, and biomolecules, the article shows how these mathematical frameworks enhance ...
Yiming Ren, Guo‐Wei Wei
wiley   +1 more source

A Dynamic Correlation‐Information‐Fusion‐Based Spatiotemporal Network for Traffic Flow Forecasting

CAAI Transactions on Intelligence Technology, EarlyView.
ABSTRACT Traffic Flow Forecasting (TFF) is a foundational task in the development of Intelligent Transport Systems (ITSs). The primary challenge is to undertake a comprehensive exploration of the intrinsic dynamic spatiotemporal correlations of the road network, unveiling the long‐term evolutionary traffic trends.
Dawen Xia, Zhan Lin, Xingyan Wang, Ruixi Huang, Jinhui Hu, Yang Hu, Huaqing Li   +6 more
wiley   +1 more source

Deep Learning-Based Community Detection Approach on Multimedia Social Networks

Applied Sciences, 2021
Exploiting multimedia data to analyze social networks has recently become one the most challenging issues for Social Network Analysis (SNA), leading to defining Multimedia Social Networks (MSNs).
Antonino Ferraro, Vincenzo Moscato, Giancarlo Sperlì   +2 more
doaj   +1 more source

Single‐Cell and Spatial Omics: Methods and Applications

MedComm, Volume 7, Issue 4, April 2026.
Systematically summarized the breakthrough sequencing technologies and computational methods for single‐cell and spatial omics across multiple omics layers, including genome, epigenome, transcriptome, proteome, and metabolome. State‐of‐the‐art methods for multi‐omics integration, cross‐modal integration, and cross‐scale integration were reviewed, with ...
Xiaoping Cen, Xiaolan Huang, Enjin Deng, Xue Gong, Na Tan, Jifeng Ye, Yin Wang, Roland Eils, Qun Luo, Yixue Li, Fangfang Qu   +10 more
wiley   +1 more source

Belief-propagation algorithm and the Ising model on networks with arbitrary distributions of motifs

, 2012
We generalize the belief-propagation algorithm to sparse random networks with arbitrary distributions of motifs (triangles, loops, etc.). Each vertex in these networks belongs to a given set of motifs (generalization of the configuration model).
A. K. Hartmann, A. V. Goltsev, B. J. Frey, C. Berge, J. F. F. Mendes, J. M. Mooij, J. Pearl, J. S. Yedidia, R. J. Baxter, S. N. Dorogovtsev, S. N. Dorogovtsev, S. N. Dorogovtsev, S. Yoon   +12 more
core   +1 more source

Large language models for bioinformatics

Quantitative Biology, Volume 14, Issue 1, March 2026.
Abstract With the rapid advancements in large language model technology and the emergence of bioinformatics‐specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications.
Wei Ruan, Yanjun Lyu, Jing Zhang, Jiazhang Cai, Peng Shu, Yang Ge, Yao Lu, Shang Gao, Yue Wang, Peilong Wang, Lin Zhao, Tao Wang, Yufang Liu, Luyang Fang, Ziyu Liu, Zhengliang Liu, Yiwei Li, Zihao Wu, Junhao Chen, Hanqi Jiang, Yi Pan, Zhenyuan Yang, Jingyuan Chen, Shizhe Liang, Wei Zhang, Terry Ma, Yuan Dou, Jianli Zhang, Xinyu Gong, Qi Gan, Yusong Zou, Zebang Chen, Yuanxin Qian, Shuo Yu, Jin Lu, Kenan Song, Xianqiao Wang, Andrea Sikora, Gang Li, Xiang Li, Quanzheng Li, Yingfeng Wang, Lu Zhang, Yohannes Abate, Lifang He, Wenxuan Zhong, Rongjie Liu, Chao Huang, Wei Liu, Ye Shen, Ping Ma, Hongtu Zhu, Yajun Yan, Dajiang Zhu, Tianming Liu   +54 more
wiley   +1 more source

Matrix formulation of fuzzy rule-based systems [PDF]

, 1996
In this paper, a matrix formulation of fuzzy rule based systems is introduced. A gradient descent training algorithm for the determination of the unknown parameters can also be expressed in a matrix form for various adaptive fuzzy networks.
Andersen, HC, Lotfi, A, Tsoi, AC
core  

A comprehensive review of cluster methods for drug–drug interaction network

Quantitative Biology, Volume 14, Issue 1, March 2026.
Abstract The detection of drug–drug interaction (DDI) is crucial to the rational use of drug combinations. Experimentally, DDI detection is time‐consuming and laborious. Currently, researchers have developed a variety of computational methods to predict DDI.
Shuyuan Cao, Guixia Liu, Xiangrun Zhou, Ji Lv   +3 more
wiley   +1 more source