Results 111 to 120 of about 105,918 (288)

A 20-bp insertion/deletion (indel) polymorphism within the CDC25A gene and its associations with growth traits in goat

Archives Animal Breeding, 2019
Cell division cycle 25A (CDC25A), a member of the CDC25 family of phosphatases, is required for progression from G1 to the S phase of the cell cycle. CDC25A provides an essential function during early embryonic development in mice, suggesting that it ...
Wenbo Cui, Nuan Liu, Xuelian Zhang, Yanghai Zhang, L. Qu, Hailong Yan, X. Lan, Wuzi Dong, C. Pan   +8 more
semanticscholar   +1 more source

Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project

Scientific Reports
Accurate indel calling plays an important role in precision medicine. A benchmarking indel set is essential for thoroughly evaluating the indel calling performance of bioinformatics pipelines.
Binsheng Gong, Dan Li, Yifan Zhang, Rebecca Kusko, Samir Lababidi, Zehui Cao, Mingyang Chen, Ning Chen, Qiaochu Chen, Qingwang Chen, Jiacheng Dai, Qiang Gan, Yuechen Gao, Mingkun Guo, Gunjan Hariani, Yujie He, Wanwan Hou, He Jiang, Garima Kushwaha, Jian-Liang Li, Jianying Li, Yulan Li, Liang-Chun Liu, Ruimei Liu, Shiming Liu, Edwin Meriaux, Mengqing Mo, Mathew Moore, Tyler J. Moss, Quanne Niu, Ananddeep Patel, Luyao Ren, Nedda F. Saremi, Erfei Shang, Jun Shang, Ping Song, Siqi Sun, Brent J. Urban, Danke Wang, Shangzi Wang, Zhining Wen, Xiangyi Xiong, Jingcheng Yang, Lihui Yin, Chao Zhang, Ruolan Zhang, Ambica Bhandari, Wanshi Cai, Agda Karina Eterovic, Dalila B. Megherbi, Tieliu Shi, Chen Suo, Ying Yu, Yuanting Zheng, Natalia Novoradovskaya, Renee L. Sears, Leming Shi, Wendell Jones, Weida Tong, Joshua Xu   +59 more
doaj   +1 more source

Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins

BMC Bioinformatics, 2008
Background Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions.
Cherkasov Artem, Hsing Michael
doaj   +1 more source

Improving dbNSFP [PDF]

, 2018
IMPROVING dbNSFP Mingyao Lu, B.S. Advisory Professor: Xiaoming Liu, Ph.D. The analysis and interpretation of DNA variation are very important for the Whole Exome studies (WES). Genome research has focused on single nucleotide variants (SNVs).
Lu, Mingyao
core   +1 more source

The Frequency of Y Alu Polymorphism (YAP) Indel in the Minangkabau Malays in Peninsular Malaysia [PDF]

, 2014
Wan Nurhayati Wan Hanafi, Muhd Shah Jehan Abd Razak, Azzura Abdullah, Nor Hazwani Ghani, Nur Azimah Osman, Farida Zuraina Mohd Yusuf   +5 more
openalex   +1 more source

Sequencing and Comparative Analysis of the Chloroplast Genome of Angelica polymorpha and the Development of a Novel Indel Marker for Species Identification

Molecules, 2019
The genus Angelica (Apiaceae) comprises valuable herbal medicines. In this study, we determined the complete chloroplast (CP) genome sequence of A. polymorpha and compared it with that of Ligusticum officinale (GenBank accession no. NC039760).
Inkyu Park, Sungyu Yang, W. Kim, Jun-Ho Song, Hyun-Sook Lee, H. O. Lee, Jung-Hyun Lee, Sang-Nag Ahn, B. Moon   +8 more
semanticscholar   +1 more source

The Distribution Characteristics of a 19-bp Indel of the PLAG1 Gene in Chinese Cattle

Animals, 2019
Simple Summary Growth traits are important quantitative traits for cattle performance, which influences herd productivity. Previous studies demonstrated that a 19-bp indel in pleomorphic adenoma gene 1 (PLAG1) is associated with bovine growth traits.
Zihui Zhou, Bi-zhi Huang, Zhenyu Lai, Shipeng Li, Fei Wu, K. Qu, Y. Jia, J. Hou, Jianyong Liu, C. Lei, R. Dang   +10 more
semanticscholar   +1 more source

novoBreak: local assembly for breakpoint detection in cancer genomes. [PDF]

, 2017
We present novoBreak, a genome-wide local assembly algorithm that discovers somatic and germline structural variation breakpoints in whole-genome sequencing data.
Boutros, Paul, Chen, Junjie, Chen, Ken, Chen, Tenghui, Chong, Zechen, Ding, Li, Fan, Xian, Gao, Min, Lee, Anna Y, Ruan, Jue, Zhou, Wanding   +10 more
core  

Multiplexed direct genomic selection (MDiGS): a pooled BAC capture approach for highly accurate CNV and SNP/INDEL detection [PDF]

, 2014
David M. Alvarado, Ping Yang, Todd E. Druley, Michael Lovett, Christina A. Gurnett   +4 more
openalex   +1 more source

Development of InDel markers for interspecific hybridization between hill pigeons and feral pigeons based on whole-genome re-sequencing [PDF]

, 2022
Jin‐Yong Kim, Jung Eun Hwang, Soo Hyung Eo, Seung-Gu Kang, Jeong Chan Moon, Jung A Kim, Jin-Young Park, Junghwa An, Yong-Gu Yeo, Jongmin Yoon   +9 more
openalex   +1 more source