Results 71 to 80 of about 105,918 (288)
Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis [PDF]
, 2012 We present an efficient phylogenetic reconstruction algorithm allowing insertions and deletions which provably achieves a sequence-length requirement (or sample complexity) growing polynomially in the number of taxa. Our algorithm is distance-based, that
Daskalakis, Constantinos +1 more
core +2 more sources
An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping
BMC Bioinformatics, 2019 BackgroundDNA methylation plays crucial roles in most eukaryotic organisms. Bisulfite sequencing (BS-Seq) is a sequencing approach that provides quantitative cytosine methylation levels in genome-wide scope and single-base resolution.
Qiangwei Zhou +3 more
semanticscholar +1 more source
OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow
BMC Bioinformatics, 2021 Background The advent of next generation sequencing has opened new avenues for basic and applied research. One application is the discovery of sequence variants causative of a phenotypic trait or a disease pathology.
Jochen Bathke, Gesine Lühken
doaj +1 more source
, 2012 The persistent horns are an important trait of speciation for the family Bovidae with complex morphogenesis taking place briefly after birth. The polledness is highly favourable in modern cattle breeding systems but serious animal welfare issues urge for
Blum, Helmut +8 more
core +1 more source
The Journal of Poultry Science, 2012 In this study, we attempted to use amplified fragment length polymorphism (AFLP) in combination with selective genotyping to detect loci that affected shank length and body weight at 10 weeks of age in Japanese quail (Coturnix japonica).
Takeshi Shimogiri +8 more
doaj +1 more source
Viruses, 2021 Alphavirus non-structural proteins 1–4 (nsP1, nsP2, nsP3, and nsP4) are known to be crucial for alphavirus RNA replication and translation. To date, nsP3 has been demonstrated to mediate many virus–host protein–protein interactions in several fundamental
Nurshariza Abdullah +8 more
doaj +1 more source
Development of InDel Markers for Brassica rapa Based on a High-resolution Melting Curve
, 2020 Brassica rapa is one of the most important leafy vegetable crops with large cultivated area in China. To increase the availability of DNA markers in B.
Rong Chen +7 more
semanticscholar +1 more source
Animals, 2022 Previous studies have found that the copy number variation (CNV) and insertion/deletion (indels) located in the sorting nexin 29 (SNX29) gene, which is an important candidate gene related to meat production and quality, are associated with growth traits ...
Yuhan Chen +9 more
doaj +1 more source
Multi-Indel: A Microhaplotype Marker Can Be Typed Using Capillary Electrophoresis Platforms
Frontiers in Genetics, 2020 Since the concept of microhaplotypes was proposed by Kidd in 2013, various microhaplotype markers have been investigated for various forensic purposes, such as individual identification, deconvolution of DNA mixtures, or forensic ancestry inference.
Shengqiu Qu +10 more
semanticscholar +1 more source
Improved Algorithms for Approximate String Matching (Extended Abstract) [PDF]
, 2008 The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants of the problem,
D Lowrance +14 more
core +4 more sources