Results 81 to 90 of about 105,918 (288)

Characterization of genome-wide genetic variations between two varieties of tea plant (Camellia sinensis) and development of InDel markers for genetic research

BMC Genomics, 2019
Single nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) are the major genetic variations and are distributed extensively across the whole plant genome.
Shengrui Liu, Yanlin An, W. Tong, Xiuju Qin, L. Samarina, Rui Guo, Xiaobo Xia, Chaoling Wei   +7 more
semanticscholar   +1 more source

Genetic polymorphisms of 44 Y chromosomal genetic markers in the Inner Mongolia Han population and its genetic relationship analysis with other reference populations

Forensic Sciences Research, 2020
Y chromosomal genetic markers in the non-recombining region are commonly used for human evolution research, familial searching, and forensic male differentiation since they strictly follow paternal inheritance. Y chromosomal short tandem repeats (Y-STRs)
Xiaoye Jin, Guohui Xing, Chunhua Yang, Xingru Zhang, Wei Cui, Chong Chen, Bofeng Zhu   +6 more
doaj   +1 more source

InDelGT: An integrated pipeline for extracting indel genotypes for genetic mapping in a hybrid population using next‐generation sequencing data

Applications in Plant Sciences, 2022
Premise Although several software packages are available for genotyping insertion/deletion (indel) polymorphisms in genomes using next‐generation sequencing data, simultaneously calling indel genotypes across many individuals for use in genetic mapping ...
Zhiliang Pan, Jinpeng Zhang, Shengjun Bai, Zhiting Li, Chunfa Tong   +4 more
doaj   +1 more source

Geographical diversity of Helicobacter pylori strains circulating in the European Part of the Russian Federation

Инфекция и иммунитет, 2021
The aim of the study was to identify INDEL markers and study geographical origin of regional H. pylori strains circulating in the European part of the Russian Federation. The study included 56 strains of H. pylori isolated in three regions of the Russian
V. M. Sorokin, A. V. Svarval, A. S. Vodop'janov, R. V. Pisanov   +3 more
doaj   +1 more source

The genomic Make-Up of a Hybrid Species - Analysis of the Invasive Cottus Lineage (Pisces, Teleostei) in the River Rhine system [PDF]

, 2007
In the past years a new invasive lineage of sculpins (Cottus species complex) has been studied that is currently expanding in the Lower River Rhine. Molecular analysis showed that this lineage has originated through hybridization of Cottus perifretum ...
Stemshorn, Kathryn
core  

SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner [PDF]

, 2013
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of
Chang Yu, Chi-Man Liu, David W Cheung, Edward Wu, Haoxiang Lin, Hing-Fung Ting, Jianqiao Zhu, Lap-Kei Lee, Ruibang Luo, Ruiqiang Li, Shaoliang Peng, Siu-Ming Yiu, Tak-Wah Lam, Thomas Wong, Wenjuan Zhu, Xiaoqian Zhu, Yingrui Li   +16 more
core   +4 more sources

Generalizations of the genomic rank distance to indels [PDF]

, 2023
João Paulo Pereira Zanetti, Lucas Peres Oliveira, Leonid Chindelevitch, João Meidânis   +3 more
openalex   +1 more source

DNA sequence variation in the fruit tree Inga inicuil (Leguminosae: Mimosoideae) from contrasting altitude distinguishes two different species

Botan‪ical Sciences, 2016
Background: Inga inicuil is a leguminous tree in Veracruz, Mexico whose fruits are locally commercialized. One taxonomic hypothesis suggests that I. inicuil is a species with a wide altitudinal range, while another segregates I. paterno from I.
Ma. Teresa P. Pulido-Salas, Dolores González, Arturo Pérez-Vázquez, Francisco Lorea-Hernández   +3 more
doaj   +1 more source

SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels [PDF]

, 2021
Adriano Di Pasquale, Nicolas Radomski, Iolanda Mangone, Paolo Calistri, Alessio Lorusso, Cesare Cammà   +5 more
openalex   +1 more source

Molecular mapping of the Cf-10 gene by combining SNP/InDel-index and linkage analysis in tomato (Solanum lycopersicum)

BMC Plant Biology, 2019
BackgroundLeaf mold, one of the major diseases of tomato caused by Cladosporium fulvum (C. fulvum), can dramatically reduce the yield and cause multimillion dollar losses annually worldwide. Mapping the resistance genes (R genes) of C.
Guan Liu, T. Zhao, X. You, Jing-bin Jiang, Jingfu Li, Xiangyang Xu   +5 more
semanticscholar   +1 more source