Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach. [PDF]
PLoS ONE, 2007 Inverted repeats have been found to occur in both prokaryotic and eukaryotic genomes. Usually they are short and some have important functions in various biological processes.
Guoyan Zhao +3 more
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IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences [PDF]
BMC Bioinformatics, 2021 Background An inverted repeat is a DNA sequence followed downstream by its reverse complement, potentially with a gap in the centre. Inverted repeats are found in both prokaryotic and eukaryotic genomes and they have been linked with countless possible ...
Hayam Alamro +4 more
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Inverted and mirror repeats in model nucleotide sequences [PDF]
, 2007 We analytically and numerically study the probabilistic properties of inverted and mirror repeats in model sequences of nucleic acids. We consider both perfect and non-perfect repeats, i.e. repeats with mismatches and gaps. The considered sequence models
Fabrizio Lillo +3 more
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Long-reads reveal that Rhododendron delavayi plastid genome contains extensive repeat sequences, and recombination exists among plastid genomes of photosynthetic Ericaceae [PDF]
PeerJ, 2020 Background Rhododendron delavayi Franch. var. delavayi is a wild ornamental plant species in Guizhou Province, China. The lack of its plastid genome information seriously hinders the further application and conservation of the valuable resource.
Huie Li, Qiqiang Guo, Qian Li, Lan Yang
doaj +2 more sources
The mitochondrial genome of the bioluminescent fish Malacosteus niger Ayres, 1848 (Stomiidae, Actinopterygii) is large and complex, and contains an inverted-repeat structure [PDF]
ZooKeys, 2023 We determined the complete mitogenome sequence of the bioluminescent fish Malacosteus niger using long-read sequencing technologies. The 21,263 bp mitogenome features a complex structure with two copies of a 1198-bp inverted-repeat and a region of 2616 ...
Romain Gastineau +6 more
doaj +3 more sources
Size of gene specific inverted repeat--dependent gene deletion In Saccharomyces cerevisiae. [PDF]
PLoS ONE, 2013 We describe here an approach for rapidly producing scar-free and precise gene deletions in S. cerevisiae with high efficiency. Preparation of the disruption gene cassette in this approach was simply performed by overlap extension-PCR of an invert repeat ...
Chanyuen Lim +5 more
doaj +1 more source
Repetitive DNA profile of the amphibian mitogenome
BMC Bioinformatics, 2020 Background Repetitive DNA elements such as direct and inverted repeat sequences are present in every genome, playing numerous biological roles. In amphibians, the functions and effects of the repeat sequences have not been extensively explored.
Noel Cabañas +5 more
doaj +1 more source
BMC Genomics, 2020 Background Enterohemorrhagic Escherichia coli O157:H7 (EHEC) is a significant foodborne pathogen that resides asymptomatically within cattle and other ruminants.
Eliot Stanton +3 more
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airpg: automatically accessing the inverted repeats of archived plastid genomes
BMC Bioinformatics, 2021 Background In most flowering plants, the plastid genome exhibits a quadripartite genome structure, comprising a large and a small single copy as well as two inverted repeat regions. Thousands of plastid genomes have been sequenced and submitted to public
Tilman Mehl, Michael Gruenstaeudl
doaj +1 more source
IEEE Access, 2022 Research pertaining to SARS-CoV-2 is in full swing to understand the origin and evolution of this deadly virus that can lead to its rapid detection. To achieve this, atypical genomic sequences which may be unique to SARS-CoV-2 or Coronaviridae family in ...
Nimisha Ghosh +2 more
doaj +1 more source