Results 51 to 60 of about 377,004 (366)

DNA Sequence of the Major Inverted Repeat in the Varicella-Zoster Virus Genome

Journal of General Virology, 1985
The major inverted repeat of 7319.5 base pairs is present at an internal site in the varicella-zoster virus genome and at one terminus. A DNA sequence of 7747 base pairs containing the repeat was determined and analysed. The G + C content of the repeat is not uniform, and is significantly higher than that of adjacent unique regions. The repeat contains
Andrew J. Davison, J. E. Scott
openalex   +4 more sources

Isolation of inverted repeat sequences, including IS1, IS2, and IS3, in Escherichia coli plasmids.

Proceedings of the National Academy of Sciences of the United States of America, 1976
A method is described for isolation of inverted repeat DNA sequences that occur in E. coli plasmids. The procedures of the isolation involved: (a) denaturation of intact plasmid DNA, (b) a rapid, 30 sec, renaturation of inverted-repeat sequences in the ...
H. Ohtsubo, E. Ohtsubo
semanticscholar   +1 more source

Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification.

PLoS Genetics, 2015
DNA replication errors are a major driver of evolution--from single nucleotide polymorphisms to large-scale copy number variations (CNVs). Here we test a specific replication-based model to explain the generation of interstitial, inverted triplications ...
Bonita J Brewer, Celia Payen, Sara C Di Rienzi, Megan M Higgins, Giang Ong, Maitreya J Dunham, M K Raghuraman   +6 more
doaj   +1 more source

A role for non-B DNA forming sequences in mediating microlesions causing human inherited disease [PDF]

, 2015
Missense/nonsense mutations and micro-deletions/micro-insertions of
Aguilera, Bacolla, Bacolla, Bacolla, Bacolla, Bacolla, Ball, Belotserkovskii, Bharti, Biffi, Bochman, Boyer, Brooks, Bzymek, Cebrián, Chen, Chen, Chuzhanova, Clark, Cooper, Cooper, Cooper, De, Ding, Dong, Du, Fleming, Greenblatt, Guo, Gusev, Iyer, Jain, Jain, Javadekar, Jeitany, Kaushik Tiwari, Kondrashov, Kouzine, Kregten, Kunkel, Kunkel, Kunkel, Lam, Lee, Levinson, León-Ortiz, Lopes, Lovett, Lu, Majumdar, Margolin, Morikawa, Mort, Mukherjee, Mukherjee, Murat, Nambiar, Patel, Raghavan, Reeves, Rosche, Rouleau, Sanders, Schofield, Sen, Sharma, Sinden, Sinden, Spurlock, Stenson, Stenson, Tappino, Vasquez, Verdin, Wang, Wells, Wickramasinghe, Williams, Wu, Wu, Wu, Wu, Yang, You, Zhao, Zhao, Zhou   +86 more
core   +1 more source

Double-strand breaks induce inverted duplication chromosome rearrangements by a DNA polymerase δ-dependent mechanism

Nature Communications, 2023
Inverted duplications, also known as foldback inversions, are commonly observed in cancers and are the major class of chromosome rearrangement recovered from yeast cells lacking Mre11 nuclease activity. Foldback priming at DNA double-strand breaks (DSBs)
Amr M. Al-Zain, Mattie R. Nester, Iffat Ahmed, Lorraine S. Symington   +3 more
doaj   +1 more source

Extraordinary features in the Chlamydomonas reinhardtii chloroplast genome: (1) rps2 as part of a large open reading frame; (2) a C. reinhardtii specific repeat sequence [PDF]

, 1998
We have determined the DNA sequence of the 3574-bp chloroplast DNA fragment of Chlamydomonas reinhardtii formed by the overlap of BamHI fragment 3 and EcoRI fragment 5.
Leu, Stefan
core   +1 more source

Complex Analyses of Short Inverted Repeats in All Sequenced Chloroplast DNAs [PDF]

BioMed Research International, 2018
Chloroplasts are key organelles in the management of oxygen in algae and plants and are therefore crucial for all living beings that consume oxygen. Chloroplasts typically contain a circular DNA molecule with nucleus-independent replication and heredity. Using “palindrome analyser” we performed complete analyses of short inverted repeats (S-IRs) in all
Václav Brázda, Jiří Lýsek, Martin Bartas, Miroslav Fojta   +3 more
openaire   +3 more sources

Target site recognition by a diversity-generating retroelement. [PDF]

PLoS Genetics, 2011
Diversity-generating retroelements (DGRs) are in vivo sequence diversification machines that are widely distributed in bacterial, phage, and plasmid genomes.
Huatao Guo, Longping V Tse, Angela W Nieh, Elizabeth Czornyj, Steven Williams, Sabrina Oukil, Vincent B Liu, Jeff F Miller   +7 more
doaj   +1 more source

Inverted Repeats in Viral Genomes [PDF]

Fluctuation and Noise Letters 5(2), L193-L200, (2005), 2004
We investigate 738 complete genomes of viruses to detect the presence of short inverted repeats. The number of inverted repeats found is compared with the prediction obtained for a Bernoullian and for a Markovian control model. We find as a statistical regularity that the number of observed inverted repeats is often greater than the one expected in ...
arxiv   +1 more source

Characterization of inverted repeated sequences in wheat nuclear DNA

Nucleic Acids Research, 1978
The properties of inverted repeated sequences in wheat nuclear DNA have been studied by HAP(1) chromatography, nuclease S1 digestion and electron microscopy. Inverted repeated sequences comprise 1.7% of wheat genome. The HAP studies show that the amount of "foldback HAP bound DNA" depends on DNA length.
S. Bazetoux, L. Jouanin, T. Huguet
openaire   +4 more sources