Results 41 to 50 of about 546,393 (311)

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets

open access: yesBMC Research Notes, 2010
Background The data produced by an Illumina flow cell with all eight lanes occupied, produces well over a terabyte worth of images with gigabytes of reads following sequence alignment.
Matthews Benjamin F   +3 more
doaj   +1 more source

Integrating the common variability language with multilanguage annotations for web engineering [PDF]

open access: yes, 2018
Web applications development involves managing a high diversity of files and resources like code, pages or style sheets, implemented in different languages.
Apel Sven   +7 more
core   +1 more source

JUMP—From Java Annotations to UML Profiles [PDF]

open access: yes, 2014
The capability of UML profiles to serve as annotation mechanism has been recognized in both industry and research. Today’s modeling tools offer profiles specific to platforms, such as Java, as they facilitate model-based engineering approaches. However, the set of available profiles is considerably smaller compared to the number of existing Java ...
Bergmayr, Alexander   +3 more
openaire   +2 more sources

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

open access: yesBMC Genomics, 2006
Background Since DNA sequencing has become easier and cheaper, an increasing number of closely related viral genomes have been sequenced. However, many of these have been deposited in GenBank without annotations, severely limiting their value to ...
Upton Chris   +2 more
doaj   +1 more source

BamView: visualizing and interpretation of next-generation sequencing read alignments. [PDF]

open access: yes, 2012
So-called next-generation sequencing (NGS) has provided the ability to sequence on a massive scale at low cost, enabling biologists to perform powerful experiments and gain insight into biological processes.
Berriman, Matthew   +5 more
core   +1 more source

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

open access: yesBMC Genomics, 2012
Background The procedural aspects of genome sequencing and assembly have become relatively inexpensive, yet the full, accurate structural annotation of these genomes remains a challenge.
Peterson Elena S   +11 more
doaj   +1 more source

A modelling language for the effective design of Java annotations [PDF]

open access: yesProceedings of the 30th Annual ACM Symposium on Applied Computing, 2015
This paper describes a new modelling language for the effective design of Java annotations. Since their inclusion in the 5th edition of Java, annotations have grown from a useful tool for the addition of meta-data to play a central role in many popular software projects.
Irene Córdoba, Juan de Lara
openaire   +4 more sources

Asynchronously Replicated Shared Workspaces for a Multi-Media Annotation Service over Internet [PDF]

open access: yes, 1998
This paper describes a world wide collaboration system through multimedia Post-its (user generated annotations). DIANE is a service to create multimedia annotations to every application output on the computer, as well as to existing multimedia ...
Benz, Hartmut, Lijding, Maria Eva
core   +9 more sources

Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries. [PDF]

open access: yesPLoS ONE, 2015
Tn-seq is a high throughput technique for analysis of transposon mutant libraries. Tn-seq Explorer was developed as a convenient and easy-to-use package of tools for exploration of the Tn-seq data.
Sina Solaimanpour   +2 more
doaj   +1 more source

GeneLibrarian: an effective gene-information summarization and visualization system

open access: yesBMC Bioinformatics, 2006
Background Abundant information about gene products is stored in online searchable databases such as annotation or literature. To efficiently obtain and digest such information, there is a pressing need for automated information-summarization and ...
Liu Heng-Hui   +3 more
doaj   +1 more source

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