Results 111 to 120 of about 57,228 (156)

MAFcounter: an efficient tool for counting the occurrences of k-mers in MAF files. [PDF]

BMC Bioinformatics
Patsakis M, Provatas K, Karatzikos A, Koilakos C, Mouratidis I, Georgakopoulos-Soares I.   +5 more
europepmc   +1 more source

CDKAM: a taxonomic classification tool using discriminative k-mers and approximate matching strategies. [PDF]

BMC Bioinformatics, 2020
Bui VK, Wei C.
europepmc   +1 more source

IL‐37 Mitigates the Inflammatory Response in Macrophages Induced by SARS‐CoV‐2 Omicron Infection Through the NF‐κB Signaling Pathway

MedComm, Volume 6, Issue 6, June 2025.
IL‐37 mitigates the infiltration of macrophages and suppresses the production of macrophage‐associated chemokines (such as CCL3 and CCL4) induced by SARS‐CoV‐2 Omicron infection through NF‐κB signaling pathway. ABSTRACT The expression levels of macrophage‐associated cytokines are significantly greater in COVID‐19 patients than in healthy individuals ...
Feifei Qi, Yiwei Yan, Mingya Liu, Qi Lv, Yanfeng Xu, Ming Liu, Fengdi Li, Ran Deng, Xujian Liang, Shuyue Li, Guocui Mou, Linlin Bao   +11 more
wiley   +1 more source

Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning. [PDF]

Sci Data
Masuda K, Abdullah AA, Pflughaupt P, Sahakyan AB.   +3 more
europepmc   +1 more source

Phylogenetic Analysis of HIV-1 Genomes Based on the Position-Weighted K-mers Method. [PDF]

Entropy (Basel), 2020
Ma Y, Yu Z, Tang R, Xie X, Han G, Anh VV.   +5 more
europepmc   +1 more source

Investigating COVID‐19‐Induced Adjustment Disorder Among Iranian Patients With Multiple Sclerosis in Pandemic Time

Neuropsychopharmacology Reports, Volume 45, Issue 2, June 2025.
The present study was to investigate COVID‐19‐induced ADs among Iranian patients living with multiple sclerosis (MS) in 2020. The present study established that AD in the patients with MS in pandemic time was at the moderate level. ABSTRACT Background The coronavirus disease 2019 (COVID‐19) outbreak raised many concerns along with physical and mental ...
Elahe Samami, Seyed Mohammad Baghbanian, Seyedeh Zeynab Hossein Nezhad, Zohreh Shahhosseini, Mahmood Moosazadeh, Forouzan Elyasi   +5 more
wiley   +1 more source

Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning

, 2023
Masuda K, Abdullah AA, Sahakyan AB.
europepmc   +1 more source

Functional implications of hexameric dynamics in SARS‐CoV‐2 Nsp15

Protein Science, Volume 34, Issue 6, June 2025.
Abstract SARS‐CoV‐2, the virus responsible for the COVID‐19 pandemic, has undergone continuous evolution, leading to the emergence of variants with altered transmissibility and immune evasion. For the non‐structural proteins (Nsps) of SARS‐CoV‐2, there are limited structural analyses of their naturally occurring mutations.
Manashi Sonowal, Gihan Ketawala, Nirupa Nagaratnam, Dhenugen Logeswaran, Shibom Basu, Daniele de Sanctis, Julien Orlans, Samuel L. Rose, Rebecca J. Jernigan, Hao Hu, Jose Domingo Meza Aguilar, Madurangi E. Ranaweera, Michele A. Zacks, Julian J.‐L. Chen, Debra T. Hansen, Lynn G. Schrag, Raimund Fromme, Sabine Botha, Petra Fromme   +18 more
wiley   +1 more source

Deep DNAshape webserver: prediction and real-time visualization of DNA shape considering extended k-mers. [PDF]

Nucleic Acids Res
Li J, Rohs R.
europepmc   +1 more source

Syncmers are more sensitive than minimizers for selecting conserved k‑mers in biological sequences. [PDF]

PeerJ, 2021
Edgar R.
europepmc   +1 more source