Results 131 to 140 of about 10,955,529 (276)

Optimasi Parameter pada Fast Correlation Based Fiter Menggunakan Algoritme Genetika untuk Klasifikasi Metagenom

JEPIN (Jurnal Edukasi dan Penelitian Informatika), 2018
Metagenome merupakan mikroorganisme yang diambil secara langsung dari alam. Proses sequencing genom dari metagenome mengakibatkan bercampurnya berbagai organisme. Hal ini menyebabkan kesulitan pada proses perakitan DNA. Oleh karena itu, dibutuhkan proses
Toto Haryanto, Hanif Bagus Guritno, Aziz Kustiyo, Irman Hermadi   +3 more
doaj   +1 more source

A survey of k-mer methods and applications in bioinformatics

Computational and Structural Biotechnology Journal
The rapid progression of genomics and proteomics has been driven by the advent of advanced sequencing technologies, large, diverse, and readily available omics datasets, and the evolution of computational data processing capabilities.
Camille Moeckel, Manvita Mareboina, Maxwell A. Konnaris, Candace S.Y. Chan, Ioannis Mouratidis, Austin Montgomery, Nikol Chantzi, Georgios A. Pavlopoulos, Ilias Georgakopoulos-Soares   +8 more
doaj   +1 more source

Additional file 2 of Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing

, 2020
Alexander Dilthey, Sebastian Meyer, Achim J. Kaasch   +2 more
openalex   +1 more source

Whole genome sequencing of historical specimens from the world's largest fungal collection yields high‐quality assemblies

New Phytologist, EarlyView.
Summary High‐throughput molecular studies of museum specimens (museomics) have great potential in biodiversity research, but fungal historical collections have scarcely been examined, leading to no comprehensive methodological assessments. Here we present a whole genome sequencing (WGS) project conducted at the Fungarium of the Royal Botanic Gardens ...
Torda Varga, Roseina Woods, Frances Pitsillides, Rowena Hill, Alona Yu Biketova, Theo Llewellyn, Brandon J. P. Shaw, Emily Hodgson, Brigid Wong, Jasmine Le, Josepha Becker, Alexander J. Bradshaw, Seth L. E. Blake, Clementine Geeves, Quentin Levicky, Lottie Goodman, Ruben L. Mole, Sidney L. Reed, M. Carly Lin, Emily Read, Keenan Harris, Raquel Pino‐Bodas, László G. Nagy, Anna Bazzicalupo, Ester Gaya   +24 more
wiley   +1 more source

An alignment- and reference-free strategy using k-mer present pattern for population genomic analyses

Mycology
Pangenomes are replacing single reference genomes to capture all variants within a species or clade, but their analysis predominantly leverages graph-based methods that require multiple high-quality genomes and computationally intensive multiple-genome ...
Guohui Shi, Yi Dai, Da Zhou, Mengmeng Chen, Jiaqi Zhang, Yilong Bi, Shuai Liu, Qi Wu   +7 more
doaj   +1 more source

Defender or accomplice? Dual roles of plant vesicle trafficking in restricting and enabling geminiviral systemic infection

New Phytologist, EarlyView.
Summary The vesicle trafficking system enables multidirectional cargo fluxes between endomembrane compartments. However, vesicle trafficking plays dual roles during pathogen infections. In plants, it mediates autophagic immune responses but can also be hijacked by pathogens to facilitate successful infections.
Pepe Cana‐Quijada, Pablo Morales‐Martínez, Tábata Rosas‐Díaz, Jessica Pérez‐Sancho, Tamara Jiménez‐Góngora, José Antonio Navarro, Rosa Lozano‐Durán, Araceli G. Castillo, Vicente Pallás, Eduardo R. Bejarano   +9 more
wiley   +1 more source

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly [PDF]

, 2017
Samarth Rangavittal, Robert S. Harris, Monika Čechová, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna D. Makova, Paul Medvedev   +6 more
openalex   +1 more source

Dataset-adaptive minimizer order reduces memory usage in k -mer counting [PDF]

, 2021
Dan Flomin, David Pellow, Ron Shamir
openalex   +1 more source

Structural Design and Immunogenicity of a Novel Self‐Adjuvanting Mucosal Vaccine Candidate for SARS‐CoV‐2 Expressed in Plants

Plant Biotechnology Journal, EarlyView.
ABSTRACT Mucosal vaccination for COVID‐19 to boost preexisting though insufficient systemic and local/mucosal immunity remains an attractive prospect but there are currently no licensed mucosal vaccines against this infection. Here, using a plant expression system, we developed a novel mucosal vaccine platform for respiratory viruses and demonstrated ...
Mi‐Young Kim, Andy Cano Tran, Ju Kim, Humblenoble Stembridge Ayuk, Adam Sparrow, Lorenzo Bossi, Megan Brown, Emil Joseph Vergara, Kathrin Göritzer, Elisabetta Groppelli, Tae‐Ho Kwon, Julian K. C. Ma, Yong‐Suk Jang, Rajko Reljic   +13 more
wiley   +1 more source

Learning Genomic Structure from $k$-mers

Sequencing a genome to determine an individual's DNA produces an enormous number of short nucleotide subsequences known as reads, which must be reassembled to reconstruct the full genome. We present a method for analyzing this type of data using contrastive learning, in which an encoder model is trained to produce embeddings that cluster together ...
Thor, Filip, Nettelblad, Carl
openaire   +2 more sources