Results 51 to 60 of about 10,955,529 (276)
Algorithms, 2022 Background: K-mer frequency counting is an upstream process of many bioinformatics data analysis workflows. KMC3 and CHTKC are the representative partition-based k-mer counting and non-partition-based k-mer counting algorithms, respectively.
Deyou Tang +4 more
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Frontiers in Microbiology, 2021 Minimal inhibitory concentration (MIC) is defined as the lowest concentration of an antimicrobial agent that can inhibit the visible growth of a particular microorganism after overnight incubation. Clinically, antibiotic doses for specific infections are
Rundong Tan +12 more
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Strobemers: an alternative to k-mers for sequence comparison
bioRxiv, 2021 K-mer-based methods are widely used in bioinformatics for various types of sequence comparison. However, a single mutation will mutate k consecutive k-mers and makes most k-mer based applications for sequence comparison sensitive to variable mutation ...
Kristoffer Sahlin
semanticscholar +1 more source
Genomic DNA k-mer Spectra: Models and Modalities [PDF]
Genome Biology, 2009 Abstract Background The empirical frequencies of DNA k-mers in whole genome sequences provide an interesting perspective on genomic complexity, and the availability of large segments of genomic sequence from many organisms means that analysis of k-mers with non-trivial lengths is now possible.
Chor, Benny +4 more
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These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure. [PDF]
PLoS ONE, 2014 K-mer abundance analysis is widely used for many purposes in nucleotide sequence analysis, including data preprocessing for de novo assembly, repeat detection, and sequencing coverage estimation.
Qingpeng Zhang +4 more
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The effect of the lateral interactions on the critical behavior of long straight rigid rods on two-dimensional lattices [PDF]
Papers in Physics, 2009 Using Monte Carlo simulations and finite-size scaling analysis, the critical behavior of attractive rigid rods of length $k$ ($k$-mers) on square lattices at intermediate density has been studied.
A. J. Ramirez-Pastor +2 more
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An efficient strategy using k-mers to analyse 16S rRNA sequences
Heliyon, 2017 The use of k-mers has been a successful strategy for improving metagenomics studies, including taxonomic classifications, or de novo assemblies, and can be used to obtain sequences of interest from the available databases.
Marcel Martínez-Porchas +1 more
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Frontiers in Plant Science, 2022 Dinoflagellates of the family Symbiodiniaceae are predominantly essential symbionts of corals and other marine organisms. Recent research reveals extensive genome sequence divergence among Symbiodiniaceae taxa and high phylogenetic diversity hidden ...
Rosalyn Lo +5 more
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A k-mer grammar analysis to uncover maize regulatory architecture
BMC Plant Biology, 2019 Background Only a small percentage of the genome sequence is involved in regulation of gene expression, but to biochemically identify this portion is expensive and laborious.
María Katherine Mejía-Guerra +1 more
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Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data [PDF]
PeerJ, 2018 Background It is possible to detect bacterial species in shotgun metagenome datasets through the presence of only a few sequence reads. However, false positive results can arise, as was the case in the initial findings of a recent New York City subway ...
Robert A. Petit III +4 more
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