Results 21 to 30 of about 4,952 (203)

KrakenUniq: confident and fast metagenomics classification using unique k-mer counts

Genome Biology, 2018
False-positive identifications are a significant problem in metagenomics classification. We present KrakenUniq, a novel metagenomics classifier that combines the fast k-mer-based classification of Kraken with an efficient algorithm for assessing the ...
F. P. Breitwieser, D. N. Baker, S. L. Salzberg   +2 more
doaj   +1 more source

Bracken: estimating species abundance in metagenomics data [PDF]

PeerJ Computer Science, 2017
Metagenomic experiments attempt to characterize microbial communities using high-throughput DNA sequencing. Identification of the microorganisms in a sample provides information about the genetic profile, population structure, and role of microorganisms ...
Jennifer Lu, Florian P. Breitwieser, Peter Thielen, Steven L. Salzberg   +3 more
doaj   +2 more sources

A Finite Element Model for Underwater Sound Propagation in 2-D Environment

Journal of Marine Science and Engineering, 2021
The finite element method is a popular numerical method in engineering applications. However, there is not enough research about the finite element method in underwater sound propagation.
Yi-Qing Zhou, Wen-Yu Luo
doaj   +1 more source

How to Fuck a Kraken

Humanimalia, 2017
Recent theories in posthumanism and animal studies have shown how race, gender, and sexuality help constitute the boundaries of the human and the animal as such.
Dagmar Van Engen
doaj   +1 more source

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads. [PDF]

PLoS ONE, 2017
An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples.
Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén   +6 more
doaj   +1 more source

Multidimensional Study on Users’ Evaluation of the KRAKEN Personal Data Sharing Platform

Applied Sciences, 2022
Background: Recent advances in the design of blockchain-based personal data sharing platforms bring the benefit of empowering users with more control and privacy-preserving measures in sharing data products.
Silvia Gabrielli, Silvia Rizzi, Oscar Mayora, Stefan More, Juan Carlos Pérez Baun, Wim Vandevelde   +5 more
doaj   +1 more source

Consensus en conflict in waterbeheer

Tijdschrift voor Sociale en Economische Geschiedenis, 2023
Consensus en conflict.  Waterbeheer in de Nederlanden 1200-1800 is een indrukwekkend boek. De vraagstelling is actueel. Wie gaven het waterbeheer in de Nederlanden vorm ?
Karel Davids
doaj   +1 more source

Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge

BMC Genomics, 2022
Background Selection of optimal computational strategies for analyzing metagenomics data is a decisive step in determining the microbial composition of a sample, and this procedure is complex because of the numerous tools currently available.
Carine Poussin, Lusine Khachatryan, Nicolas Sierro, Vijay Kumar Narsapuram, Fernando Meyer, Vinay Kaikala, Vandna Chawla, Usha Muppirala, Sunil Kumar, Vincenzo Belcastro, James N. D. Battey, Elena Scotti, Stéphanie Boué, Alice C. McHardy, Manuel C. Peitsch, Nikolai V. Ivanov, Julia Hoeng   +16 more
doaj   +1 more source

Environmental management activities of NHL teams

Apstract: Applied Studies in Agribusiness and Commerce, 2022
Over the past two decades, the sports sector has paid increasing and growing attention to understanding sustainability, including the environment, and in particular what can be done in practice.
Laura Márton
doaj   +3 more sources

Omics Insights Into the Effects of Highbush Blueberry and Cranberry Crop Agroecosystems on Honey Bee Health and Physiology

PROTEOMICS, EarlyView.
ABSTRACT Honey bees (Apis mellifera) are vital pollinators in fruit‐producing agroecosystems like highbush blueberry (HBB) and cranberry (CRA). However, their health is threatened by multiple interacting stressors, including pesticides, pathogens, and nutritional changes.
Huan Zhong, Yuming Shi, Aleksandra Kozlova, Renata Moravcova, Jason C. Rogalski, Aidan Jamieson, Lance Lansing, Kyung‐Mee Moon, Xiaojing Yuan, Amanda S. Gregoris, Heather Higo, Julia Common, Ida M. Conflitti, Mateus Pepinelli, Lan Tran, Morgan Cunningham, Hosna Jabbari, Syed Abbas Bukhari, Sarah K. French, Rodrigo Ortega Polo, Shelley E. Hoover, Stephen F. Pernal, Pierre Giovenazzo, M. Marta Guarna, Amro Zayed, Leonard J. Foster   +25 more
wiley   +1 more source