Long‐read genotyping with SLANG (Simple Long‐read loci Assembly of Nanopore data for Genotyping)
Premise Most phylogenomic library preparation methods and bioinformatic analysis tools in restriction site–associated DNA sequencing (RADseq)/genotyping‐by‐sequencing (GBS) studies are designed for use with Illumina data.
Marco Dorfner+3 more
doaj +1 more source
My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing [PDF]
Forensic scientists are currently investigating how to transition from capillary electrophoresis (CE) to massive parallel sequencing (MPS) for analysis of forensic DNA profiles. MPS offers several advantages over CE such as virtually unlimited multiplexy
Deforce, Dieter+4 more
core +1 more source
Twelve microsatellite loci previously developed in the tropical tree Cariniana estrellensis were genetically characterized in Cariniana legalis. Polymorphisms were assessed in 28 C.
Marcela Corbo Guidugli+5 more
doaj +1 more source
Multi-locus models of genetic risk of disease [PDF]
Evidence for genetic contribution to complex diseases is described by recurrence risks to relatives of diseased individuals. Genome-wide association studies allow a description of the genetics of the same diseases in terms of risk loci, their effects and allele frequencies. To reconcile the two descriptions requires a model of how risks from individual
Wray, NR, Goddard, ME
openaire +4 more sources
Prime editing uses the Cas9 nickase fused to a reverse transcriptase to copy a DNA sequence into a specific locus from a ‘prime editing’ guide RNA (pegRNA), eliminating the need for double-stranded DNA breaks and donor DNA templates.
Nike Bharucha+3 more
doaj
The Broiling Soup of Retinoblastoma Genetics
Right from the time, two hit hypothesis of retinoblastoma was described to the present advancements in the field of genetics involving retinoblastoma; there has been a plethora of information available.
Kaur Amritjeet, Panjwani Sahil
doaj +1 more source
Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements [PDF]
Dichelobacter nodosus is a Gram-negative, anaerobic bacterium and the causal agent of footrot in sheep. Multiple locus variable number tandem repeat (VNTR) analysis (MLVA) is a portable technique that involves the identification and enumeration of ...
Acharya+62 more
core +2 more sources
The Genetics of Human Schistosomiasis Infection Intensity and Liver Disease: A Review
Schistosomiasis remains the fourth most prevalent parasitic disease affecting over 200 million people worldwide. Control efforts have focussed on the disruption of the life cycle targeting the parasite, vector and human host.
Estelle M. Mewamba+6 more
doaj +1 more source
Special features of RAD Sequencing data:implications for genotyping [PDF]
Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop ...
Blaxter, Mark L+5 more
core +1 more source
Genetic Incompatibilities Between Mitochondria and Nuclear Genes: Effect on Gene Flow and Speciation
The process of speciation is, according to the biological species concept, the reduction in gene flow between genetically diverging populations. Most of the previous theoretical studies analyzed the effect of nuclear genetic incompatibilities on gene ...
Arndt Telschow+3 more
doaj +1 more source