CAKR: commutative algebra k-mer representations for genomics. [PDF]
Nat CommunSuwayyid F +5 more
europepmc +1 more source
Supervised Protein Structure Classification Using Topological Persistence With DeltaFold
Proteins: Structure, Function, and Bioinformatics, EarlyView.ABSTRACT Recent advances in protein structure prediction have considerably increased the number of available structures, underscoring the need for scalable and accurate methods to compare and classify this huge amount of data. Current approaches based on sequence alignment or structural superposition often lack sensitivity and/or are computationally ...
Joseph Nardin‐Gennequin +3 more
wiley +1 more source
Phylogenetic tree inference with tropical axial attention. [PDF]
Front Syst BiolTeska C, Pasque K, Yoshida R, Hashemi B.
europepmc +1 more source
Impact of Packaging and Recycling Systems on Material Recirculation: A Stage‐Decomposition Model
Packaging Technology and Science, EarlyView.A system‐level view emerges from decomposing recycling into four stages (participation, collection, sorting and process yield), diagnosing constraints and targeting interventions. Cumulative equivalent uses (CEUs) quantify long‐term retention, revealing marginal improvements at high baselines generate disproportionately larger gains than low‐baseline ...
Diogo Figueirinhas +3 more
wiley +1 more source
The Higher Structure of Symmetries of Axion-Maxwell Theory. [PDF]
Commun Math PhysDel Zotto M, Dell'Acqua M, Gårding ER.
europepmc +1 more source
New views of some invariants associated with the Cartesian 2D velocity gradient tensor
Quarterly Journal of the Royal Meteorological Society, EarlyView.Vorticity and divergence of horizontal flow are fundamental quantities in meteorology; both are linear functions of the four elements of the 2D velocity gradient tensor and both are formally unchanged under coordinate rotation. We explore four quadratic functions of the elements that are geometrically invariant in this sense, finding some novel ...
I. Roulstone, S. A. Clough, A. A. White
wiley +1 more source
Symmetry-based derivation of neuronal membrane dynamics: a Lie group approach to action potential generation. [PDF]
Front NeurosciMelendy RF, Blue DH.
europepmc +1 more source
Low‐order system for eddy growth in the storm track
Quarterly Journal of the Royal Meteorological Society, EarlyView.Reanalysis data for the North Atlantic storm track are used to construct a low‐order model that optimally fits the observed interaction between the mean flow and baroclinic eddies. The resulting model is a certain type of predator–prey model. It explains various properties of the storm track, including why eddies grow linearly with the Eady growth rate,
Maarten H. P. Ambaum, Thomas H. A. Frame
wiley +1 more source
Noncommuting Common Causes, Law of Total Probability, and No-Conspiracy. [PDF]
Entropy (Basel)Hofer-Szabó G.
europepmc +1 more source
Data‐driven emulation of flow‐dependent background‐error variance in variational data assimilation
Quarterly Journal of the Royal Meteorological Society, EarlyView.A machine‐learning approach is developed to emulate flow‐dependent background‐error variance within a variational data assimilation framework. The method reproduces uncertainty information that would normally require a 50‐member ensemble using only five members, while maintaining comparable observation fit and forecast performance.
Wei Pan +3 more
wiley +1 more source