Results 71 to 80 of about 145,529 (249)

Comparative Metagenomic Analysis of Marine eDNA Investigating the Production Crisis of Aquacultured Saccharina japonica

Diversity
Aquaculture farms cultivating Saccharina japonica are highly active in Wando, Korea, and Rongcheng, China. However, the yield of S. japonica significantly declined in the Rongcheng region in 2022 compared to previous records, whereas that in Wando ...
Soyun Choi, Kwon Mo Yang, Dong Mun Choi, Yang Ho Choi, Xiuliang Wang, Lingxiu Wang, Xiaoyong Liu, Delin Duan, Hyun Park, Jeong Ha Kim   +9 more
doaj   +1 more source

PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. [PDF]

, 2011
Microbial diversity is typically characterized by clustering ribosomal RNA (SSU-rRNA) sequences into operational taxonomic units (OTUs). Targeted sequencing of environmental SSU-rRNA markers via PCR may fail to detect OTUs due to biases in priming and ...
Eisen, Jonathan A, Green, Jessica L, Kembel, Steven W, Ladau, Joshua, O'Dwyer, James P, Pollard, Katherine S, Riesenfeld, Samantha J, Sharpton, Thomas J   +7 more
core   +3 more sources

Phylogenic analysis of new viral cluster of large phages with unusual DNA genomes containing uracil in place of thymine in gene-sharing network, using phages S6 and PBS1 and relevant uncultured phages derived from sewage metagenomics [PDF]

, 2022
Jumpei Uchiyama, Iyo Takemura‐Uchiyama, Kazuyoshi Gotoh, Shin‐ichiro Kato, Yoshihiko Sakaguchi, Hironobu Murakami, Tomoki Fukuyama, Mao Kaneki, Osamu Matsushita, Shigenobu Matsuzaki   +9 more
openalex   +1 more source

MOSMAP: Mosquito metagenome analysis pipeline

Bioinformation
MosMAP is a bioinformatics pipeline designed for mosquito metagenome analysis. MosMAP automates essential processes like quality control, taxonomic classification, species abundance estimation and visualization by integrating tools such as Trimgalore, Kraken2, Bracken and Krona into a user-friendly workflow.
Kulsum, Umay, Patankar, Chitra, Biswas, Debasis   +2 more
openaire   +2 more sources

A framework for human microbiome research. [PDF]

, 2012
A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The National Institutes of Health (NIH)-funded Human Microbiome Project Consortium has established a ...
Human Microbiome Project Consortium
core  

16S rRNA Gene Sequencing-Based Identification and Comparative Analysis of the Fecal Microbiota of Five Syntopic Lizard Species from a Low-Mountain Area in Western Bulgaria

Applied Microbiology
Studies on the gut microbiome of free-living reptiles in Europe are generally fragmentary and still missing in Bulgaria. We aimed to identify and compare the fecal microbiota profiles of five syntopic lizard species from three families: the European ...
Irina Lazarkevich, Stephan Engibarov, Simona Mitova, Emiliya Vacheva, Steliyana Popova, Nikola Stanchev, Rumyana Eneva, Yana Gocheva, Ivanka Boyadzhieva, Maria Gerginova   +9 more
doaj   +1 more source

Integrated analysis of fecal metagenomics and metabolomics reveals the role of gut microbiota in the pathogenesis of primary central nervous system lymphoma [PDF]

, 2023
Zhuang Kang, Rong Zhang, Can Wang, Binyan Liu, Shenglan Li, Mengqian Huang, Weichunbai Zhang, Feng Chen, Wenbin Li   +8 more
openalex   +1 more source

Analysis of metagenomic data

Nature Reviews Methods Primers
Metagenomics has revolutionized our understanding of microbial communities, offering unprecedented insights into their genetic and functional diversity across Earth’s diverse ecosystems. Beyond their roles as environmental constituents, microbiomes act as symbionts, profoundly influencing the health and function of their host organisms.
Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser, Francesco Andreace, Ran Blekhman, Dagmara Błaszczyk, Rayan Chikhi, Keith A. Crandall, Katja Della Libera, Dallace Francis, Alina Frolova, Abigail Shahar Gancz, Naomi E. Huntley, Pooja Jaiswal, Tomasz Kosciolek, Pawel P. Łabaj, Wojciech Łabaj, Tu Luan, Christopher Mason, Ahmed M. Moustafa, Harihara Subrahmaniam Muralidharan, Onur Mutlu, Nika Mansouri Ghiasi, Ali Rahnavard, Fengzhu Sun, Shuchang Tian, Braden T. Tierney, Emily Van Syoc, Riccardo Vicedomini, Joseph P. Zackular, Alex Zelikovsky, Kinga Zielińska, Erika Ganda, Emily R. Davenport, Mihai Pop, David Koslicki, Serghei Mangul   +39 more
openaire   +3 more sources

Metagenomic Analysis of Raw Milk and the Inactivation of Foodborne Pathogens Using Ultraviolet-C

Foods
The purpose of this study was to identify the microbial community of raw milk samples before and after UV-C irradiation and to establish fundamental data on UV-C treatment to improve the safety and shelf life of raw milk.
Ju-Hui Lee, Hyeonjun Moon, Hye-Rim Park, Ji-In Noh, Sang-Soon Kim   +4 more
doaj   +1 more source

Metagenomic analysis of gut microbiota in Parkinson's disease patients from Central China [PDF]

, 2020
Fan Zhang, Qiang Zhao, Xing Fang, Mei-Ling Xu, Jie Tang, Yu Zhang, Ping Gao, Xiaodong Sun, Ming Sang, Puqing Wang   +9 more
openalex   +1 more source