Results 11 to 20 of about 178,547 (361)
Nature Reviews Genetics, 2019 Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly moving from research to clinical laboratories. This emerging approach is changing
Chiu, Charles Y, Miller, Steven A
core +7 more sources
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph [PDF]
Bioinform., 2014 MEGAHIT is a NGS de novo assembler for assembling large and complex metagenomics data in a time- and cost-efficient manner. It finished assembling a soil metagenomics dataset with 252Gbps in 44.1 hours and 99.6 hours on a single computing node with and ...
Lam, Tak-Wah +4 more
core +4 more sources
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics [PDF]
Microbiome, 2020 Metagenomics is revolutionizing the study of microorganisms and their involvement in biological, biomedical, and geochemical processes, allowing us to investigate by direct sequencing a tremendous diversity of organisms without the need for prior ...
Eli Levy Karin +2 more
openalex +2 more sources
Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions
Foods, 2023 Various fields have been identified in the “omics” era, such as genomics, proteomics, transcriptomics, metabolomics, phenomics, and metagenomics. Among these, metagenomics has enabled a significant increase in discoveries related to the microbial world ...
N. N. Nam +3 more
semanticscholar +1 more source
DNA Research, 2022 AbstractVarious microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven amino acids (IVYWREL) among all ...
Masaomi Kurokawa +6 more
openaire +2 more sources
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
bioRxiv, 2023 Metagenomics can be used to monitor the spread of antibiotic resistance genes (ARGs). ARGs found in databases such as ResFinder and CARD primarily originate from culturable and pathogenic bacteria, while ARGs from non-culturable and non-pathogenic ...
R. Gschwind +5 more
semanticscholar +1 more source
Advances in Metagenomics and Its Application in Environmental Microorganisms
Frontiers in Microbiology, 2021 Metagenomics is a new approach to study microorganisms obtained from a specific environment by functional gene screening or sequencing analysis.
Lu Zhang +12 more
semanticscholar +1 more source
Nature Communications, 2021 Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in the root microbiome. At present, the molecular mechanisms underlying these responses remain largely uncharacterized.
Ling Xu +20 more
semanticscholar +1 more source
Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada [PDF]
, 2012 This report summarizes the events of the 1st International Functional Metagenomics Workshop. The workshop was held on May 7 and 8 in St. Jacobs, Ontario, Canada and was focused on building a core international functional metagenomics community, exploring
Ashby, Deborah +26 more
core +7 more sources
CoverM: read alignment statistics for metagenomics [PDF]
BioinformaticsSummary Genome-centric analysis of metagenomic samples is a powerful method for understanding the function of microbial communities. Calculating read coverage is a central part of analysis, enabling differential coverage binning for recovery of genomes ...
Samuel T. N. Aroney +5 more
semanticscholar +1 more source