Results 291 to 300 of about 117,934 (343)

Investigating microbial population structure and function in the chicken caeca and large intestine over time using metagenomics. [PDF]

BMC Res Notes
Star-Shirko B, Pangga GM, McKenna A, Corcionivoschi N, Richmond A, Ijaz UZ, Gundogdu O.   +6 more
europepmc   +1 more source

Host Traits Impact the Outcome of Metagenomic Library Preparation From Dental Calculus Samples Across Diverse Mammals

Molecular Ecology Resources, EarlyView.
ABSTRACT Dental calculus metagenomics has emerged as a valuable tool for studying the oral microbiomes of humans and a few select mammals. With increasing interest in wild animal microbiomes, it is important to understand how widely this material can be used across the mammalian tree of life, refine the related protocols and understand the expected ...
Markella Moraitou, John L. Richards, Chanah Bolyos, Konstantina Saliari, Emmanuel Gilissen, Zena Timmons, Andrew C. Kitchener, Olivier S. G. Pauwels, Richard Sabin, Phaedra Kokkini, Roberto Portela Miguez, Katerina Guschanski   +11 more
wiley   +1 more source

Hybridization capture sequencing for <i>Vibrio</i> spp. and associated virulence factors. [PDF]

mBio
Brumfield KD, Enke S, Swan BK, Carrasquilla L, Lee MD, Stern DB, Gieser L, Hasan NA, Usmani M, Jutla AS, Huq A, Caviness K, Goodrich JS, Bull R, Colwell RR.   +14 more
europepmc   +1 more source

Robust, Open‐Source and Automation‐Friendly DNA Extraction Protocol for Hologenomic Research

Molecular Ecology Resources, EarlyView.
ABSTRACT Global efforts to standardise methodologies benefit greatly from open‐source procedures that enable the generation of comparable data. Here, we present a modular, high‐throughput nucleic acid extraction protocol standardised within the Earth Hologenome Initiative to generate both genomic and microbial metagenomic data from faecal samples of ...
Jonas G. Lauritsen, Christian Carøe, Nanna Gaun, Garazi Martin‐Bideguren, Aoife Leonard, Raphael Eisenhofer, Iñaki Odriozola, M. Thomas P. Gilbert, Ostaizka Aizpurua, Antton Alberdi, Carlotta Pietroni   +10 more
wiley   +1 more source

Beyond clinical genomics: addressing critical gaps in One Health AMR surveillance. [PDF]

Front Microbiol
Vallejo-Espín D, Galarza-Mayorga J, Lalaleo L, Calero-Cáceres W.   +3 more
europepmc   +1 more source

Rapid DNA/eDNA‐Based ID Tools for Improved Chondrichthyan Monitoring and Management

Molecular Ecology Resources, EarlyView.
ABSTRACT Rapid DNA/eDNA‐based ID tools, which detect specific genetic patterns without requiring sequencing, are essential for biodiversity and wildlife trade monitoring, particularly for species of conservation concern. However, the practical application of these methods remains limited by the availability of standardised protocols, accessibility of ...
Marcela Maki Alvarenga, Ingrid Vasconcellos Bunholi, Aisni Mayumi C. L. Adachi, Marcelo Merten Cruz, Leonardo Manir Feitosa, Eduarda Valério de Jesus, Maria Eduarda Leda Lopes, Cintia Povill, Daniela Souza, Yan Torres, Antonio Mateo Solé‐Cava, Rodrigo Rodrigues Domingues, Patricia Charvet, Vanessa Paes da Cruz   +13 more
wiley   +1 more source

Diet-Gut Microbiota Relations: Critical Appraisal of Evidence From Studies Using Metagenomics. [PDF]

Nutr Rev
Lotankar M, Houttu N, Mokkala K, Laitinen K.   +3 more
europepmc   +1 more source

High ward-level and within-sample diversity of Klebsiella pneumoniae on a Malawian neonatal unit revealed by single colony whole genome sequencing and post-enrichment metagenomics

Pearse O, Zuza A, Lester R, Mangochi H, Siyabu P, Tewesa E, Edwards T, Thomson NR, Feasey NA, Kawaza K, Jewell C, Musicha P, Cornick J, Heinz E.   +13 more
europepmc   +1 more source

Key findings from 15 years of <i>Mangrovibacter</i> research: a generalist bacterium beyond endophytes. [PDF]

Appl Environ Microbiol
Chin HS, Ravi Varadharajulu N, Teo KC, Cheong PCH, Tang S-L.   +4 more
europepmc   +1 more source

Wet Lab Protocols Matter: Choice of DNA Extraction and Library Preparation Protocols Bias Ancient Oral Microbiome Recovery

Molecular Ecology Resources, EarlyView.
ABSTRACT Ancient DNA (aDNA) analysis of archaeological dental calculus has provided a wealth of insights into ancient health, demography and lifestyles. However, the workflow for ancient metagenomics is still evolving, raising concerns about reproducibility.
Sterling L. Wright, Muslih Abdul‐Aziz, Grace N. Blaha, Christine K. Ta, Abigail Gancz, Iyunoluwa J. Ademola‐Popoola, Anna Szécsényi‐Nagy, Paul C. Sereno, Laura S. Weyrich   +8 more
wiley   +1 more source