Results 11 to 20 of about 6,631,455 (355)
Modelling Coordination in Biological Systems [PDF]
Leveraging Applications of Formal Methods, 2006 We present an application of the Reo coordination paradigm to provide a compositional formal model for describing and reasoning about the behaviour of biological systems, such as regulatory gene networks. Reo governs the interaction and flow of data between components by allowing the construction of connector circuits which have a precise formal ...
Clarke, Dave +2 more
openaire +2 more sources
Observability and Structural Identifiability of Nonlinear Biological Systems [PDF]
Complex, 2018 Observability is a modelling property that describes the possibility of inferring the internal state of a system from observations of its output. A related property, structural identifiability, refers to the theoretical possibility of determining the ...
Villaverde, Alejandro F.
core +2 more sources
On P Systems as a Modelling Tool for Biological Systems [PDF]
Workshop on Membrane Computing, 2006 We introduce a variant of P systems where rules have associated a real number providing a measure for the “intrinsic reactivity”of the rule and roughly corresponding to the kinetic coefficient which, in bio-chemistry, is usually associated to each ...
B. Alberts +9 more
core +2 more sources
Modelling biological systems from molecules to dynamical networks. [PDF]
BMC Syst Biol, 2012 A report of the 5th IEEE International Conference on Systems Biology (IEEE ISB2011), 2-4 September 2011, Zhuhai, China.
Wang Y, Zhang XS, Chen L.
europepmc +2 more sources
Hybrid modelling of biological systems: current progress and future prospects
Briefings Bioinform., 2022 Integrated modelling of biological systems is becoming a necessity for constructing models containing the major biochemical processes of such systems in order to obtain a holistic understanding of their dynamics and to elucidate emergent behaviours ...
Fei Liu, M. Heiner, D. Gilbert
semanticscholar +1 more source
Multi-scale analysis and modelling of collective migration in biological systems
Philosophical Transactions of the Royal Society of London. Biological Sciences, 2020 Collective migration has become a paradigm for emergent behaviour in systems of moving and interacting individual units resulting in coherent motion. In biology, these units are cells or organisms.
A. Deutsch +3 more
semanticscholar +1 more source
A Minimal OO Calculus for Modelling Biological Systems [PDF]
Electronic Proceedings in Theoretical Computer Science, 2011 In this paper we present a minimal object oriented core calculus for modelling the biological notion of type that arises from biological ontologies in formalisms based on term rewriting.
Livio Bioglio
doaj +1 more source
Aspects of multiscale modelling in a process algebra for biological systems [PDF]
Electronic Proceedings in Theoretical Computer Science, 2010 We propose a variant of the CCS process algebra with new features aiming at allowing multiscale modelling of biological systems. In the usual semantics of process algebras for modelling biological systems actions are instantaneous.
Roberto Barbuti +4 more
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Modelling Biological Systems: A New Algorithm for the Inference of Boolean Networks
Mathematics, 2021 Biological systems are commonly constituted by a high number of interacting agents. This great dimensionality hinders biological modelling due to the high computational cost.
Mario Rubio-Chavarría +3 more
doaj +1 more source
The physics of higher-order interactions in complex systems [PDF]
Nature Physics, 2021 Complex networks have become the main paradigm for modelling the dynamics of interacting systems. However, networks are intrinsically limited to describing pairwise interactions, whereas real-world systems are often characterized by higher-order ...
F. Battiston +13 more
semanticscholar +1 more source