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Tools for Modelling Biological Systems with CellML
2005 IEEE Engineering in Medicine and Biology 27th Annual Conference, 2005The CellML language is an XML-based specification for representing mathematical models of biological processes. The University of Auckland's Bioengineering Institute is committed to creating tools and evolving the language so that biologists and modelers can build, understand, and share models. The CellML standard and tool developments are open source;
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IEEE/ACM Transactions on Computational Biology & Bioinformatics, 2015
J. Bordon, M. Moškon, N. Zimic, M. Mraz
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J. Bordon, M. Moškon, N. Zimic, M. Mraz
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Predictive modelling of complex agronomic and biological systems.
Plant, Cell and Environment, 2013J. Keurentjes, J. Molenaar, B. Zwaan
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Modelling complex biological systems using an agent-based approach.
Integrative Biology, 2012M. Holcombe +20 more
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Multi-scale modelling of biological systems in process algebra with multi-way synchronisation
Computational Methods in Systems Biology, 2011A. Degasperi, Muffy Calder
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Stochastic modelling for quantitative description of heterogeneous biological systems
Nature reviews genetics, 2009D. Wilkinson
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Computational modelling of biological systems: tools and visions
Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, 2000P. Kohl, D. Noble, R. Winslow, P. Hunter
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On P Systems as a Modelling Tool for Biological Systems
Workshop on Membrane Computing, 2005F. Bernardini +5 more
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Modelling periodic oscillation of biological systems with multiple timescale networks.
Systems biology, 2004Ruiqi Wang +3 more
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