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ACM SIGSOFT Software Engineering Notes, 2005
In this paper we demonstrate the relevance of abstraction, reuse, objects, classes, component and inheritance hierarchies, multiplicity, visual modeling, and other current software development best practices. We show how it is possible to start with a direct diagrammatic representation of a biological structure such as a cell, using terminology ...
Manuj Darbari, Vipin Saxena
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In this paper we demonstrate the relevance of abstraction, reuse, objects, classes, component and inheritance hierarchies, multiplicity, visual modeling, and other current software development best practices. We show how it is possible to start with a direct diagrammatic representation of a biological structure such as a cell, using terminology ...
Manuj Darbari, Vipin Saxena
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Fuzzy Petri nets for modelling of uncertain biological systems
Briefings Bioinform., 2018The modelling of biological systems is accompanied with epistemic uncertainties that range from structural uncertainty to parametric uncertainty due to such limitations as insufficient understanding of the underlying mechanism and incomplete measurement ...
Fei Liu, M. Heiner, D. Gilbert
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Formal Models of Biological Systems
2017Recent biomedical research studies are focused in the mechanisms by which misfolded proteins lead to the generation of oxidative stress in the form of reactive oxygen species (ROS), often implicated in neurodegenerative diseases and aging. Moreover, biological experiments are designed to investigate how proteostasis depends on the balance between the ...
Georgia, Theocharopoulou +2 more
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Modeling biological systems rhythms
SPIE Proceedings, 1999The model of the biosystem reaction on external stimulating force is offered. Chronorhythms both for transition and quasistationary states of the biosystem are analyzed. For the separate passive functional unit the relations circumscribing correlation functional indicators chronorhythms, parameters of external energizing forces and biosystems are shown.
Vasyl P. Pishak +3 more
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2020
Modeling of biological systems and ecology is a useful exercise, as it allows one to discover and focus on the important aspects of the life-system dynamics. Population dynamics is a good example. Modeling also helps us understand system optimization. With a long span of time, evolution picks out optimal systems. Models of optimization can be revealing
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Modeling of biological systems and ecology is a useful exercise, as it allows one to discover and focus on the important aspects of the life-system dynamics. Population dynamics is a good example. Modeling also helps us understand system optimization. With a long span of time, evolution picks out optimal systems. Models of optimization can be revealing
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Models of dispersal in biological systems
Journal of Mathematical Biology, 1988In order to provide a general framework within which the dispersal of cells or organisms can be studied, we introduce two stochastic processes that model the major modes of dispersal that are observed in nature. In the first type of movement, which we call the position jump or kangaroo process, the process comprises a sequence of alternating pauses and
Othmer, Hans G., Dunbar, S. R., Alt, W.
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Steps of Modeling Complex Biological Systems
Pharmacopsychiatry, 2008A disease like schizophrenia results from the malfunctioning of a complex, multi-faceted biological system. As a consequence, the root causes of such a disease and the trajectories from health toward the disease are very difficult to comprehend with simple cause-and-effect reasoning.
E O, Voit, Z, Qi, G W, Miller
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Modeling of rotating biological contactor systems
Biotechnology and Bioengineering, 1980AbstractAn investigation of the rotating biological contractor (RBC) process variables to determine the efficiency of biological oxygen demand (BOD) removal is presented. Operating parameters including influent BOD content (<355 mg/liter), flow rate, disk surface area, hydraulic loading, disk rotational speed, liquid retention time, stage number ...
Yeun C, Wu, Ed D, Smith, Yung T, Hung
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