Results 161 to 170 of about 2,036,207 (293)

MDCrow: automating molecular dynamics workflows with large language models. [PDF]

Mach Learn Sci Technol
Campbell Q, Cox S, Medina J, Watterson B, White AD.   +4 more
europepmc   +1 more source

Polarization‐resolved femtosecond Vis/IR spectroscopy tailored for resolving weak signals in biological samples using minimal sample volume

FEBS Open Bio, EarlyView.
Unique biological samples, such as site‐specific mutant proteins, are available only in limited quantities. Here, we present a polarization‐resolved transient infrared spectroscopy setup with referencing to improve signal‐to‐noise tailored towards tracing small signals. We provide an overview of characterizing the excitation conditions for polarization‐
Clark Zahn, Karsten Heyne
wiley   +1 more source

Molecular Dynamics Simulations Cyclotide Kalata B1 Interactions with Lipid Bilayers. [PDF]

Molecules
Forlemu NY, Njabon EN, Mallia A, Mwongela S, Tangirala S.   +4 more
europepmc   +1 more source

Microglial dynamics and ferroptosis induction in human iPSC‐derived neuron–astrocyte–microglia tri‐cultures

FEBS Open Bio, EarlyView.
A tri‐culture of iPSC‐derived neurons, astrocytes, and microglia treated with ferroptosis inducers as an Induced ferroptosis model was characterized by scRNA‐seq, cell survival, and cytokine release assays. This analysis revealed diverse microglial transcriptomic changes, indicating that the system captures key aspects of the complex cellular ...
Hongmei Lisa Li, Hiroko Ohmiya, Sou Sakamoto, Masato Yugami, Akiko Oki, Makoto Furusawa, Yan Ling   +6 more
wiley   +1 more source

Thermoresponsive Polymers under Solvent Flow through Molecular Dynamics. [PDF]

J Phys Chem B
Hopkins SD, Blaisten-Barojas E.
europepmc   +1 more source

Multi‐omics and low‐input proteomics profiling reveals dynamic regulation driving pluripotency initiation in early mouse embryos

FEBS Open Bio, EarlyView.
Mouse pre‐implantation development involves a transition from totipotency to pluripotency. Integrating transcriptomics, epigenetic profiling, low‐input proteomics and functional assays, we show that eight‐cell embryos retain residual totipotency features, whereas cytoskeletal remodeling regulated by the ubiquitin‐proteasome system drives progression ...
Wanqiong Li, Xi Xiao, Lingbin Qi, Chanyi Li, Sirui Song, Jiaying Qin, Zhigang Xue, Jinfeng Xue, Huaifang Li   +8 more
wiley   +1 more source

Transferable generative models bridge femtosecond to nanosecond time-step molecular dynamics. [PDF]

Sci Adv
Diez JV, Schreiner M, Olsson S.
europepmc   +1 more source

Differential regulation of ZFAS1 splice variants by endoplasmic reticulum stress in hepatocyte cell lines

FEBS Open Bio, EarlyView.
ZFAS1 is a lncRNA promoting cell proliferation and migration, exhibiting high expression in various cancers. It is conserved, widely expressed, and produces multiple splice variants with unclear roles. We identified several splice variants in hepatocyte models, and found that inhibiting or suppressing regulators of the unfolded protein response (PERK ...
Sébastien Soubeyrand, Paulina Lau, Ruth McPherson   +2 more
wiley   +1 more source

DynMoCo: A novel AI framework to reveal modular substructures of protein from molecular dynamics. [PDF]

Biophys J
Mao L, Kwak M, Kazemipour Ashkezari AH, Li Z, Cong P, Chen Y, Phee JH, Kang S, Li J, Zhu C.   +9 more
europepmc   +1 more source

Molecular dynamics

Molecular dynamics
identifier:oai:t2r2.star.titech.ac.jp ...
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