Results 221 to 230 of about 6,867,350 (304)

Investigating the structural changes of myosin under high pressure processing by molecular dynamics simulations. [PDF]

Curr Res Food Sci
Wang X, Tang J, Ramaswamy HS, Duan H, Wang C.   +4 more
europepmc   +1 more source

Polarization‐resolved femtosecond Vis/IR spectroscopy tailored for resolving weak signals in biological samples using minimal sample volume

FEBS Open Bio, EarlyView.
Unique biological samples, such as site‐specific mutant proteins, are available only in limited quantities. Here, we present a polarization‐resolved transient infrared spectroscopy setup with referencing to improve signal‐to‐noise tailored towards tracing small signals. We provide an overview of characterizing the excitation conditions for polarization‐
Clark Zahn, Karsten Heyne
wiley   +1 more source

DruGUI 2.0: mapping protein druggability with probe-based molecular dynamics. [PDF]

Bioinformatics
Ventura C, Lee JY, Bogetti AT, Banerjee A, Licht M, Bahar I.   +5 more
europepmc   +1 more source

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

FEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei, Fredrik Orädd, Konstantinos Magkakis, Magnus Andersson   +3 more
wiley   +1 more source

Molecular Dynamics Simulation of the Gas Hydrate Nucleation Process in a Coal Matrix. [PDF]

ACS Omega
Liu C, Chen Q, Zheng Z, Zang Q, Wu Q, Zhang B, Shao Z, Zhang Q, Wu Q.   +8 more
europepmc   +1 more source

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Combined effects of ultrasound and [bmim][cl] on heavy oil-solid separation: experiments and molecular dynamics simulations. [PDF]

Ultrason Sonochem
Zeng L, Wang X, Xu K, Du J, Tan Y, Tan P, Sun Y, Hou J.   +7 more
europepmc   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

FEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill, Yelyzaveta Pulnova, Elke De Zitter, Helen M. Ginn, Briony A. Yorke   +4 more
wiley   +1 more source

Author Correction: Utility of a commercial antibody against NTRK1 for western blotting and potential application to immunohistochemistry in adult mouse brain

Scientific Reports
Kazuo Nakajima, Mizuho Ishiwata, Tadafumi Kato   +2 more
doaj   +1 more source

Active subspace learning for coarse-grained molecular dynamics. [PDF]

J Chem Phys
Wojnar A, Pankavich S, Pak AJ.
europepmc   +1 more source