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Machine Learning for Molecular Simulation [PDF]

open access: yesAnnual Review of Physical Chemistry, 2020
Machine learning (ML) is transforming all areas of science. The complex and time-consuming calculations in molecular simulations are particularly suitable for an ML revolution and have already been profoundly affected by the application of existing ML methods.
Cecilia Clementi   +2 more
exaly   +6 more sources

Molecular Dynamics Simulations

Current Opinion in Structural Biology, 2002
Molecular dynamics simulations have become a standard tool for the investigation of biomolecules. Simulations are performed of ever bigger systems using more realistic boundary conditions and better sampling due to longer sampling times. Recently, realistic simulations of systems as complex as transmembrane channels have become feasible.
Daan Frenkel, Berend Smit
openaire   +4 more sources

Molecular Simulations On Supercomputers

The International Journal of Supercomputing Applications, 1991
Work from our laboratory using molecular dynamics applied to the study of peptide/protein folding dynam ics and thermodynamics in aqueous solution, and the exploration and development of molecular solvent in teraction models including electronic polarizability is described.
Charles L. Brooks III   +2 more
openaire   +2 more sources

Molecular Simulations of Rhodopsin Tetrameter

Protein & Peptide Letters, 2007
Di/oligomerization of G-protein coupled receptors (GPCRs) is well established, however very little is known regarding the interaction details. Current paper presents results of molecular dynamics simulations of theoretical model of rhodopsin tetramer with transducine (Gt) in lipid bilayer.
Magdalena Witt   +2 more
openaire   +2 more sources

Modeling and Simulation in Molecular Pharmacology

1998
A stochastic simulation program of drug-receptor interaction is presented. The user can select a set of conditions concerning the processes of response release (type of cellular response, drug distribution and metabolism etc.) and the program plots a family of dose-response curves.
George I. Mihalas   +3 more
openaire   +2 more sources

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