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Molecular Simulations of Rhodopsin Tetrameter

Protein & Peptide Letters, 2007
Di/oligomerization of G-protein coupled receptors (GPCRs) is well established, however very little is known regarding the interaction details. Current paper presents results of molecular dynamics simulations of theoretical model of rhodopsin tetramer with transducine (Gt) in lipid bilayer.
M, Witt, J, Ciarkowski, C, Czaplewski
openaire   +2 more sources

Molecular dynamics simulation and steered molecular dynamics simulation on irisin dimers

Journal of Molecular Modeling, 2018
Irisin is found closely associated with promoting the browning of beige fat cells in white adipose tissue. The crystal structure reveals that irisin forms a continuous inter-subunit β-sheet dimer. Here, molecular dynamics (MD) simulation and steered molecular dynamics (SMD) simulation were performed to investigate the dissociation process and the ...
Qi, Gao   +5 more
openaire   +2 more sources

Integrating Molecular Docking and Molecular Dynamics Simulations

2019
Computational methods, applied at the early stages of the drug design process, use current technology to provide valuable insights into the understanding of chemical systems in a virtual manner, complementing experimental analysis. Molecular docking is an in silico method employed to foresee binding modes of small compounds or macromolecules in contact
Lucianna H S, Santos   +2 more
openaire   +2 more sources

Molecular Simulations

2022
Judit E. Šponer, Jiří Šponer
openaire   +2 more sources

Molecular Simulation – A Primer

1997
Quantum chemistry allows us to calculate molecular properties with arbitrary accuracy: potential surface, geometry, moments, spectra, etc. However, there are properties which do not depend on a single molecule alone but can only be defined for an ensemble of many molecules: melting point, diffusion coefficient, density, for example.
openaire   +2 more sources

Molecular dynamics simulation

Computing in Science & Engineering, 1999
The article presents a discussion on molecular dynamics (MD) simulation. MD requires a description of the molecules and the forces that act between them; a well known example is the Lennard-Jones potential, in which spherical particles repel one another at close range but otherwise attract.
openaire   +1 more source

Running Molecular Simulations

2017
The preceding chapters have provided an introduction into the theoretical background of molecular simulations given by the statistical thermodynamics, and into the general principles of the Monte Carlo and molecular dynamics simulation techniques.
openaire   +1 more source

Molecular imaging in oncology: Current impact and future directions

Ca-A Cancer Journal for Clinicians, 2022
Steven P Rowe, Martin G Pomper
exaly  

Molecular simulation

Fluid Phase Equilibria, 2019
Jeffrey Potoff, Ioannis Economou
openaire   +1 more source

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