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Multiple Sequence Alignment with DIALIGN
2013DIALIGN is a software tool for multiple sequence alignment by combining global and local alignment features. It composes multiple alignments from local pairwise sequence similarities. This approach is particularly useful to discover conserved functional regions in sequences that share only local homologies but are otherwise unrelated.
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Overestimation for Multiple Sequence Alignment
2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, 2007Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple modification of the A-star algorithm that improves much multiple sequence alignment, both in time and memory, at the cost of a small accuracy loss.
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, 2011 Nexus file containing multiple sequence alignment for phylogenetic analysis of Flectonotus and Fritziana, with character sets defined for mitochondrial 16S ribosomal RNA and proopiomelanocortin A (POMC ...
Blackburn, David C. +1 more
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2017
Introduction Phylogeny estimation generally begins by estimating a multiple sequence alignment on the set of sequences. Once the multiple sequence alignment is computed, a tree can then be computed on the alignment (Figure 9.1). Not surprisingly, errors in multiple sequence alignment estimation tend to produce errors in estimated ...
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Introduction Phylogeny estimation generally begins by estimating a multiple sequence alignment on the set of sequences. Once the multiple sequence alignment is computed, a tree can then be computed on the alignment (Figure 9.1). Not surprisingly, errors in multiple sequence alignment estimation tend to produce errors in estimated ...
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2015
Multiple Sequence alignment (MSA) is a generalization of Pairwise Sequence Alignment to multiple sequences. Thus, instead of aligning two sequences, the objective in MSA is to align k sequences simultaneously such an overall functional is optimized. The motivation behind doing a MSA is that it allows us to extract consensus evident in a widely diverse ...
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Multiple Sequence alignment (MSA) is a generalization of Pairwise Sequence Alignment to multiple sequences. Thus, instead of aligning two sequences, the objective in MSA is to align k sequences simultaneously such an overall functional is optimized. The motivation behind doing a MSA is that it allows us to extract consensus evident in a widely diverse ...
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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
Journal of Molecular Biology, 2000Cedric Notredame +2 more
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Genetic algorithm with ant colony optimization (GA-ACO) for multiple sequence alignment
Applied Soft Computing Journal, 2008Shun-Feng Su, Chen-Chia Chuang
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Recent developments in the MAFFT multiple sequence alignment program
Briefings in Bioinformatics, 2008Kazutaka Katoh, H Toh, Hiroyuki Toh
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Multiple sequence alignment modeling: methods and applications
Briefings in Bioinformatics, 2016Cedrik Magis +2 more
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Optimization of multiple-sequence alignment based on multiple-structure alignment
Proteins: Structure, Function and Bioinformatics, 2006Maxim Shatsky +2 more
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