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On the current failure -- but bright future -- of topology-driven biological network alignment [PDF]
"On the current failure--but bright future--of topology-driven
biological network alignment". Advances in Protein Chemistry and Structural
Biology, Volume 131 (2022), pp. 1-44, 2022 The function of a protein is defined by its interaction partners. Thus, topology-driven network alignment of the protein-protein interaction (PPI) networks of two species should uncover similar interaction patterns and allow identification of functionally similar proteins.
arxiv +1 more source
Fingerprint for Network Topologies [PDF]
, 2009 12papes, 3 figures, in ...
Shi Zhou, Changjia Chen, Yuchun Guo
openaire +4 more sources
Cyclic topology in complex networks [PDF]
Physical Review E, 2005 We propose a cyclic coefficient $R$ which represents the cyclic characteristics of complex networks. If the network forms a perfect tree-like structure then $R$ becomes zero. The larger value of $R$ represents that the network is more cyclic. We measure the cyclic coefficients and the distributions of the local cyclic coefficient for both various real ...
Jin Min Kim +3 more
openaire +4 more sources
A hierarchical network model for network topology design using genetic algorithm
MATEC Web of Conferences, 2017 Network topology design has directly impact on network construction costs and network performance. Majority of current network topology design take the network physical topology parameters into consideration, such as the reliability and cost constraints,
Wang Chunlin +4 more
doaj +1 more source
IEEE Access, 2022 Accurate topology is the basis of fine management and safe operation of distribution network. With the development of distributed generation, more and more users participate in the distribution network, which makes the flow direction of distribution ...
Lizong Zhang +6 more
doaj +1 more source
The effect of network-topology to propagation on networks [PDF]
2015 54th Annual Conference of the Society of Instrument and Control Engineers of Japan (SICE), 2015 6pages ...
Norihito Toyota +2 more
openaire +3 more sources
Survey on network topology visualization
网络与信息安全学报, 2018 As the basis of network monitoring, network management, and network security situation awareness, network topology visualization plays an underlying role in reflecting the whole state of the network and discovering the potential rules in the network ...
WANG Song, ZHANG Ye, WU Yadong
doaj +3 more sources
3D Network Model for Strong Topological Insulator Transitions [PDF]
Phys. Rev. B 104, 125142 (2021), 2020 We construct a three-dimensional (3D), time-reversal symmetric generalization of the Chalker-Coddington network model for the integer quantum Hall transition. The novel feature of our network model is that in addition to a weak topological insulator phase already accommodated by the network model framework in the pre-existing literature, it hosts ...
arxiv +1 more source
Topological generalizations of network motifs [PDF]
Physical Review E, 2004 Biological and technological networks contain patterns, termed network motifs, which occur far more often than in randomized networks. Network motifs were suggested to be elementary building blocks that carry out key functions in the network. It is of interest to understand how network motifs combine to form larger structures.
Uri Alon +3 more
openaire +3 more sources
Dynamic Modeling of the Electric Transportation Network [PDF]
, 2005 We introduce a model for the dynamic self-organization of the electric grid. The model is characterized by a conserved magnitude, energy, that can travel following the links of the network to satisfy nodes' load. The load fluctuates in time causing local
Eguíluz, Víctor M. +2 more
core +2 more sources