Results 121 to 130 of about 9,783 (227)

AliSim-HPC: parallel sequence simulator for phylogenetics. [PDF]

Bioinformatics, 2023
Ly-Trong N, Barca GMJ, Minh BQ.
europepmc   +1 more source

Optimized N-deque partition dual-deque merge string sorting algorithm. [PDF]

Sci Rep
Ketchaya S, Rattanatranurak A.
europepmc   +1 more source

Making PLUMED Fly: A Tutorial on Optimizing Performance. [PDF]

J Phys Chem B
Rapetti D, Bonomi M, Camilloni C, Bussi G, Tribello GA.   +4 more
europepmc   +1 more source

Cache-efficient and vectorized parallel dynamic programming for RNA folding. [PDF]

PLoS One
Gruzewski M, Palkowski M.
europepmc   +1 more source

Fuzzing OpenMP Compilers [PDF]

OpenMP is a widely used API for parallel programming in C/C++ and Fortran. Its flexibility and simplicity have made its usage popular in many numerical or scientific applications.
Chang, Raymond
core  

Toward cardiac electrophysiology digital twins with an efficient open source scalable solver on GPU clusters. [PDF]

Sci Rep
Berg LA, Oliveira RS, Camps J, de Lima LMR, de Oliveira Campos J, Wang ZJ, Doste R, Bueno-Orovio A, Dos Santos RW, Rodriguez B.   +9 more
europepmc   +1 more source

A Novel Implementation of CCSD Analytic Gradients Using Cholesky Decomposition of the Two-Electron Integrals and Abelian Point-Group Symmetry. [PDF]

J Phys Chem A
Melega L, Nottoli T, Gauss J, Lipparini F.   +3 more
europepmc   +1 more source

Protocol for quantifying and modeling light scattering in coral microskeletons. [PDF]

STAR Protoc
Kramer N, Jacques SL, Wangpraseurt D.
europepmc   +1 more source

slideimp: efficient imputation of DNA methylation data. [PDF]

Bioinformatics
Pham H, Lombroso AP, Cevik EC, Taylor HS, O'Donnell KJ.   +4 more
europepmc   +1 more source

Acceleration of the Relativistic Dirac-Kohn-Sham Method with GPU: A Pre-Exascale Implementation of BERTHA and PyBERTHA. [PDF]

J Chem Theory Comput
Storchi L, Bellentani L, Hammond J, Orlandini S, Pacifici L, Antonini N, Belpassi L.   +6 more
europepmc   +1 more source