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Identification and Analysis of Palindromes for RNA Sequences
2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE), 2016A palindrome is a string of the form S = A1 A2 or S = A1 aA2, where A1 and A2 are substrings of S and the reverse of A2 exactly matches with A1. DNA palindromes show direct influence on tumerogenesis due to the formation of DNA palindromes at microRNA genes, which involve in tumor development. Furthermore, RNA palindromes play a crucial role in genomic
Chien-Hung Huang +6 more
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On the symmetries of multi-palindromic DNA sequences
Journal of Theoretical Biology, 1978Abstract There are several instances of multiple, overlapping palindromes in DNA sequences which have recently been reported. To ascertain the likelihood of specific biological function for these interdigitating symmetries it is necessary to calculate their probabilities of occurrence.
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Notice of Retraction Research on the Palindromic sequences among tRNA sequences
2011 Seventh International Conference on Natural Computation, 2011Based on all the tRNA sequences with high similarity in their functions and structures, 3420 tRNA sequences are put as a whole in this paper, and then the palindromic sequences of different length within all the tRNA sequences are counted. We observed that: (I) the probability of one given palindromic sequence P(i) with the given palindromic sequence i
Yuanze Mao, Fangping Wei, Jijian Xie
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Palindromic sequences - boogeymen in the genes
2009Perfect inverted repeats, or palindromes, are present in the DNA of natural plasmids, viral and bacterial genomes and eukaryotic chromosomes and organelles. Their significance was first acknowledged in the context of the bacterial type II restriction– modification systems and a number of regulatory proteins were shown to bind palindromic ...
Lisnić, Berislav +3 more
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BASE SHIFTING SEQUENCES AND THE PALINDROME PROPERTY
Bulletin of the Australian Mathematical SocietyAbstractFor $M,N,m\in \mathbb {N}$ with $M\geq 2, N\geq 1$ and $m \geq 2$ , we define two families of sequences, $\mathcal {B}_{M,N}$ and $\mathcal {B}_{M,N,m}$ . The nth term of $\mathcal {B}_{M,N}$ is obtained by expressing n in base M and recombining those digits in base N. The nth term of $\mathcal {B}_{M,N,m}$ is defined by $\mathcal {
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Recombinogenicity of palindromic sequences in yeast.
2019Prikazan je utjecaj duljine palindroma i razmaknica na stabilnost palindroma te utjecaj inaktivacije odabranih gena na stabilnost palindromskih i kvazipalindromskih sekvenci.
Štafa, Anamarija +3 more
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Cloning and Characterization of DNAs with Palindromic Sequences
1996A sentence contains an ordered set of letters that is interpreted by reading in one direction, but a palindromic sentence such as “Madam I’m Adam” can be read in either direction. Palindromic sentences are relatively rare because languages use a large number of letters and we normally write sense.
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Palindromic base sequences and replication of eukaryote chromosome ends
Nature, 1974A new theory is proposed to explain the synthesis of the 5′ ends of linear DNA molecules. It suggests that chromosome ends consist of palindromic base sequences. These can form self-complementary hairpin loops, which can be converted by DNA ligase, a specific endonuclease, and DNA polymerase, into completely replicated ends.
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Efficient Computation of Palindromes in Sequences with Uncertainties
2017In this work, we consider a special type of uncertain sequence called weighted string. In a weighted string every position contains a subset of the alphabet and every letter of the alphabet is associated with a probability of occurrence such that the sum of probabilities at each position equals 1. Usually a cumulative weight threshold Open image in new
Mai Alzamel +4 more
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Cancer epigenetics in clinical practice
Ca-A Cancer Journal for Clinicians, 2023Veronica Davalos, Manel Esteller
exaly