Results 91 to 100 of about 215 (132)

PHASTER: A Better, Faster Version of the PHAST Phage Search Tool [PDF]

Nucleic Acids Research, 2016
PHASTER (PHAge Search Tool - Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and plasmids. Although the steps in the phage identification pipeline in PHASTER remain largely the same as in the original PHAST, numerous software ...
David Wishart, David Arndt, Tanvir Sajed
exaly   +4 more sources

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PHAST: Hardware-accelerated shortest path trees

Journal of Parallel and Distributed Computing, 2011
We present a novel algorithm to solve the nonnegative single-source shortest path problem on road networks and other graphs with low highway dimension. After a quick preprocessing phase, we can compute all distances from a given source in the graph with essentially a linear sweep over all vertices.
Daniel Delling, Andrew V. Goldberg, Andreas Nowatzyk, Renato F. Werneck   +3 more
openaire   +3 more sources

PhaST: Model-free Phaseless Subspace Tracking

ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2019
Phaseless subspace tracking is the problem of recovering a time sequence of discrete signals from magnitude-only measurements of their linear projections, when the true signal lies in a low-dimensional subspace that can change with time. A typical assumption used in a lot of work is that the subspace changes gradually over time.
Seyedehsara Nayer, Namrata Vaswani
openaire   +1 more source

Performance portability in a real world application: PHAST applied to Caffe

The International Journal of High Performance Computing Applications, 2022
This work covers the PHAST Library’s employment, a hardware-agnostic programming library, to a real-world application like the Caffe framework. The original implementation of Caffe consists of two different versions of the source code: one to run on CPU platforms and another one to run on the GPU side. With PHAST, we aim to develop a single-source code
Pablo Antonio Martínez, Biagio Peccerillo, Sandro Bartolini, José M. García 0001, Gregorio Bernabé   +4 more
openaire   +3 more sources

PHAST-MBD: Implementing Many-Body Dispersion in the PHAST 2.0 Potential, Results for Noble Gases

Journal of Chemical Theory and Computation
A recently published empirical force field (herein PHAST or PHAST 2.0) is employed in its many-body dispersion-corrected form (PHAST-MBD) to examine the effects of collective dispersion interactions. Rare gases are used as a systematic way to test increasing importance of van der Waals attractions in systems dominated by repulsion-dispersion that are a
Matthew Mostrom, Adam Hogan, Logan Ritter, William Morris, Brian Space   +4 more
openaire   +2 more sources

PHAST: plano holographic aspheric stitching technique

Advances in Optical and Mechanical Technologies for Telescopes and Instrumentation III, 2018
Telescope design advancements are leading to the need for larger convex secondary elements, making the use of traditional refractive test geometries impractical. In response to requests for larger convex components, Harris has developed the Plano Holographic Aspheric Stitching Technique (PHAST)[1], a novel metrology approach that offers versatility as ...
Malcolm N. O'Sullivan, Cormic Merle, Rebecca Borrelli   +2 more
openaire   +1 more source

Application of Phast in the Quantitative Consequence Analysis for the Boiler BLEVE

2013 Third International Conference on Intelligent System Design and Engineering Applications, 2013
Boilers BLEVE are among the most devastating accidents likely in chemical process industry, which lead to shock waves and rocketing fragments of ruptured vessels. The prediction of the boiler explosion energy and its impact is fairly helpful to the prevention and protection of accidents.
Qu Fang, Zuo Zhe, Si Qingmin
openaire   +1 more source

A Polarizable and Transferable PHAST CO₂ Potential for Materials Simulation

Journal of Chemical Theory and Computation, 2013
Reliable PHAST (Potentials with High Accuracy Speed and Transferability) intermolecular potential energy functions for CO2 have been developed from first principles for use in heterogeneous systems, including one with explicit polarization. The intermolecular potentials have been expressed in a transferable form and parametrized from nearly exact ...
Mullen, Ashley L., Pham, Tony, Forrest, Katherine A., Cioce, Christian R., McLaughlin, Keith, Space, Brian   +5 more
openaire   +3 more sources

Pharmacophore Alignment Search Tool (PhAST): Significance Assessment of Chemical Similarity

Molecular Informatics, 2013
AbstractPreviously, we proposed a ligand‐based virtual screening technique (PhAST) based on global alignment of linearized interaction patterns. Here, we applied techniques developed for similarity assessment in local sequence alignments to our method resulting inp‐values for chemical similarity.
Hähnke V, Rupp M, Hartmann AK, Schneider G   +3 more
openaire   +3 more sources

Phast4Windows: A 3D Graphical User Interface for the Reactive‐Transport Simulator PHAST

Groundwater, 2012
Phast4Windows is a Windows® program for developing and running groundwater‐flow and reactive‐transport models with the PHAST simulator. This graphical user interface allows definition of grid‐independent spatial distributions of model properties—the porous media properties, the initial head and chemistry conditions, boundary conditions, and locations ...
Scott R, Charlton, David L, Parkhurst
openaire   +2 more sources