Results 151 to 160 of about 665,884 (260)

How toothed whales divide up the world: phylogeny and ecology shape life-history strategies of odontocetes. [PDF]

BMC Ecol Evol
Ferguson SH, Feyrer LJ, de Greef E, Higdon JW.   +3 more
europepmc   +1 more source

Ancient hybridization and phylogenetic discordance: Exploring evolutionary complexity in Asteraceae

Applications in Plant Sciences, EarlyView.
Abstract Premise Conflicting phylogenetic signals are common in plant phylogenomics and often reflect evolutionary histories shaped by processes like hybridization, incomplete lineage sorting, and whole‐genome duplication (WGD). We aimed to identify and assess these complex processes in the hyper‐diverse family Asteraceae to offer insight into the ...
Paige A. Ellestad, Erika R. Moore‐Pollard, Carolina M. Siniscalchi, Ramhari Thapa, Linda E. Watson, J. Mauricio Bonifacino, Jennifer R. Mandel   +6 more
wiley   +1 more source

The complete chloroplast genome sequence of <i>Camellia yangii</i> D.Wei Zhao (Theaceae), a rare tea plant germplasm. [PDF]

Mitochondrial DNA B Resour
Deng HQ, Liao XJ, Yang SX, Yu XQ, Liu ZS.   +4 more
europepmc   +1 more source

Phylogenetics on the Web

BioTechniques, 1999
openaire   +3 more sources

HybSuite: An integrated pipeline for hybrid capture phylogenomics from reads to trees

Applications in Plant Sciences, EarlyView.
Abstract Premise Hybrid capture sequencing (Hyb‐Seq) is a widely used approach in phylogenomics, providing efficient access to targeted genomic regions. However, deriving high‐quality phylogenetic trees from raw sequencing reads requires extensive bioinformatics processing, which increases complexity, the risk of errors, and challenges in file ...
Yu‐Xuan Liu, Zi‐Jia Lu, Wyckliffe Omondi Omollo, Meng‐Meng Wang, Li‐Guo Zhang, Tao Xiong, Xue‐Qin Wang, Yi‐Ying Wang, Miao Sun   +8 more
wiley   +1 more source

Complete chloroplast genome and phylogenetic analysis of <i>Richardia brasiliensis</i> (Rubiaceae, Rubioideae, Spermacoceae). [PDF]

Mitochondrial DNA B Resour
Kang ES, Kim HB, Jang JE, Son DC.
europepmc   +1 more source

tanggle: An R package for the visualization of phylogenetic networks

Applications in Plant Sciences, EarlyView.
Abstract Premise Phylogenetic trees depict evolutionary relationships among taxa. However, they are strictly bifurcating structures that do not take into account several types of evolutionary events such as horizontal gene transfer, hybridization, or introgression. Although the development of new methods in phylogenetic networks has recently increased,
Klaus Schliep, Marta Vidal‐García, Leann Biancani, L. Francisco Henao‐Díaz, Eren Ada, Joshua Justison, Claudia Solís‐Lemus   +6 more
wiley   +1 more source

The complete chloroplast genome sequence of <i>Maesa cavinervis</i> (Primulaceae s.l.) and its phylogenetic analysis. [PDF]

Mitochondrial DNA B Resour
Shi QK, Wu NF, Zhang B, Feng Z, Wang GL, Feng Y, Xu B.   +6 more
europepmc   +1 more source

HapAsmbl: A reference‐aided pipeline for assembling haplotypes in Nanopore amplicon sequence data of polymorphic populations

Applications in Plant Sciences, EarlyView.
Abstract Premise Advances in long‐read sequencing offer new possibilities to investigate haplotype diversity across multiple genes in plants and other taxa through multi‐locus, long‐read amplicon sequencing (multi‐locus LRAS). Despite this progress, there is a notable absence of dedicated bioinformatics pipelines for assembling diploid haplotypes of ...
Ayodele Oluwaseyi Fakoya, Augustine Chen, Rowan Paul Herridge, Richard Colin Macknight, Lynette Ruth Brownfield   +4 more
wiley   +1 more source

General-purpose topology-aware embedding of tumor phylogenetic trees with graph neural networks. [PDF]

Bioinform Adv
Bresolin P, Vandin F.
europepmc   +1 more source