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Troubleshooting Molecular Phylogenetic Analyses

Annual Review of Ecology and Systematics, 2002
▪ Abstract  The number, size, and scope of phylogenetic analyses using molecular data has increased steadily in recent years. This has simultaneously led to a dramatic improvement in our understanding of phylogenetic relationships and a better appreciation for an array of methodological problems that continue to hinder progress in phylogenetic studies ...
Michael J. Sanderson, H. Bradley Shaffer
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Phylogenetic analyses of mode of larval development

Seminars in Cell & Developmental Biology, 2000
Phylogenies based on morphological or molecular characters have been used to provide an evolutionary context for analysis of larval evolution. Studies of gastropods, bivalves, tunicates, sea stars, sea urchins, and polychaetes have revealed massive parallel evolution of similar larval forms.
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GENETIC AND PHYLOGENETIC ANALYSES OF ENDANGERED SPECIES

Annual Review of Genetics, 1994
INTRODUCTION 467 THE MATERIALS AND RESOURCES FOR CONSERVATION GENETICS ....... 469 SOME EXAMPLES 471 EACH POPULATION BOTTLENECK IS DIFFERENT AND QUALITATIVELY UNPREDICTABLE 475 SOME CRITIQUES OF THE BOTTLENECK HYPOTHESIS 478 MOLECULAR PHYLOGENY AND ENDANGERED SPECIES 480 CONCLUSIONS ...
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Molecular-phylogenetic analyses of human gastrointestinal microbiota

Current Opinion in Gastroenterology, 2001
Molecular-phylogenetic methods have revolutionized the analysis of complex microbial communities. Polymerase chain reaction amplification and phylogenetic analysis of small-subunit ribosomal RNA gene sequences allow microbes to be identified objectively, even in the absence of cultivation.
D N, Frank, N R, Pace
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Signal, Noise, and Reliability in Molecular Phylogenetic Analyses

Journal of Heredity, 1992
DNA sequences and other molecular data compared among organisms may contain phylogenetic signal, or they may be randomized with respect to phylogenetic history. Some method is needed to distinguish phylogenetic signal from random noise to avoid analysis of data that have been randomized with respect to the historical relationships of the taxa being ...
D M, Hillis, J P, Huelsenbeck
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Sequence, phylogenetic and variant analyses of antithrombin III

Biochemical and Biophysical Research Communications, 2013
Antithrombin III (ATIII) performs a critical anticoagulant function by precluding the activation of blood clotting proteinases, aided by its two cofactors, heparin and heparan sulfate. Though several studies have been carried out on physiological, biochemical and structural perspectives on ATIII, so far there are limited studies on the molecular ...
Abhishek, Kumar   +3 more
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Phylogenetic Analyses of Parasites in the New Millennium

2006
Phylogenetic analysis has changed greatly in the last decade, and the most important themes in that change are reviewed here. Sequence data have become the most common source of phylogenetic information. This means that explicit models for evolutionary processes have been developed in a likelihood context, which allow more realistic data analyses ...
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Phylogenetic Analyses of Chemokine Receptors from Sequence Retrieval to Phylogenetic Trees

2020
Phylogenetic trees are an essential requisite for comparative biology studies where hypotheses regarding the evolution of genes can be investigated. Trees provide visual and statistical guides to characterize the degree of relatedness among biological entities from genes to species.
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Comparison of seven Crassostrea mitogenomes and phylogenetic analyses

Molecular Phylogenetics and Evolution, 2010
[Wu, Xiangyun; Xu, Xiaodong; Yu, Ziniu; Xia, Jianjun] Chinese Acad Sci, S China Sea Inst Oceanol, Key Lab Marine Bioresource Sustainable Utilizat, Guangzhou 510301, Guangdong, Peoples R China; [Wei, Zhenpeng] Shandong Marine Food Nutr Res Inst, Rongcheng 264309, Shandong, Peoples R ...
Xiangyun, Wu   +4 more
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Phylogenetic and Structural Analyses of Vesicular Glutamate Transporters

Molecular Neurobiology
Vesicular glutamate transporters are members of the solute carrier 17 (SLC17) family, and mammals express three closely related isoforms: vGluT1-3. While vGluT genes have been identified across various species in the Animalia kingdom, the evolutionary relationships and the natural history of vGluT members remain poorly understood.
Thainá Garbino dos Santos   +3 more
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