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Phylogenetic analysis of haloalkane dehalogenases
Proteins: Structure, Function, and Bioinformatics, 2007AbstractHaloalkane dehalogenases (HLDs) are enzymes that catalyze the cleavage of carbon–halogen bonds by a hydrolytic mechanism. Although comparative biochemical analyses have been published, no classification system has been proposed for HLDs, to date, that reconciles their phylogenetic and functional relationships.
Eva, Chovancová +3 more
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Combining data in phylogenetic analysis
Trends in Ecology & Evolution, 1996Systematists have access to multiple sources of character information in phylogenetic analysis. For example, it is not unusual to have nucleotide sequences from several different genes, or to have molecular and morphological data. How should diverse data be analyzed in phylogenetic analysis?
J P, Huelsenbeck +2 more
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A phylogenetic analysis of Legionella
Archives of Microbiology, 1983Four species of Legionella, L. pneumophila NCTC 11192, L. bozemanii NCTC 11368, L. micdadei NCTC 11371 and L. jordanis ATCC 33623 have been characterized by oligonucleotide cataloguing of their 16S ribosomal RNA. All four species are phylogenetically closely related, while no specific relationship could be detected with any other group of organisms ...
W, Ludwig, E, Stackebrandt
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Phylogenetic analysis of anthropoid relationships
Journal of Human Evolution, 1998The relationships of anthropoids to other primates are currently debated, as are the relationships among early fossil anthropoids and crown anthropoids. To resolve these issues, data on 291 morphological characters were collected for 57 taxa of living and fossil primates and analyzed using PAUP and MacClade.
C, Ross, B, Williams, R F, Kay
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Phylogenetic Analysis of HeterothallicNeurosporaSpecies
Fungal Genetics and Biology, 1997We examined the phylogenetic relationships among five heterothallic species of Neurospora using restriction fragment polymorphisms derived from cosmid probes and sequence data from the upstream regions of two genes, al-1 and frq. Distance, maximum likelihood, and parsimony trees derived from the data support the hypothesis that strains assigned to N ...
M P, Skupski, D A, Jackson, D O, Natvig
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Phylogenetic Analysis of Adenovirus Sequences
2007Members of the family Adenoviridae have been isolated from a large variety of hosts, including representatives from every major vertebrate class from fish to mammals. The high prevalence, together with the fairly conserved organization of the central part of their genomes, make the adenoviruses one of (if not the) best models for studying viral ...
Balázs, Harrach, Mária, Benko
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Phylogenetic Analysis of Geminiviruses
Members of the family Geminiviridae have single-stranded (ss), circular DNA genomes that are encapsidated into non-enveloped quasi-icosahedral twinned (geminate) particles, causing yield losses in several economically important crops worldwide. Sequence-based approaches used for molecular characterization of Geminiviridae genomes, associated with ...openaire +2 more sources
Phylogenetic Analysis of Poliovirus Sequences
2016Comparative genomic sequencing is a major surveillance tool in the Polio Laboratory Network. Due to the rapid evolution of polioviruses (~1 % per year), pathways of virus transmission can be reconstructed from the pathways of genomic evolution. Here, we describe three main phylogenetic methods; estimation of genetic distances, reconstruction of a ...
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Phylogenetic Analysis Workflows
2013This first example scenario is concerned with phylogenetic analyses. As they are comparatively easy to understand (also for non-biologists) and there is also a plethora of easy-to-use software tools available for the individual analysis steps, phylogenetic analyses have become a frequently used, quasistandard application for illustrating bioinformatics
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QUANTITATIVE CHARACTERS IN PHYLOGENETIC ANALYSIS
Cladistics, 1989Abstract— When analysing phylogcnetic relationships at low laxonomic levels it is often the ease that many of the features that can be used to separate taxa show continuous variation. The theoretical and practical problems for the use of such quantitative characters in phylogenetic analysis arc examined.
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