All galls are divided into three or more parts: recursive enumeration of labeled histories for galled trees [PDF]
Algorithms for Molecular Biology, 2023 Objective In mathematical phylogenetics, a labeled rooted binary tree topology can possess any of a number of labeled histories, each of which represents a possible temporal ordering of its coalescences.
Shaili Mathur, Noah A. Rosenberg
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A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis. [PDF]
PLoS Genetics, 2012 Transcriptional enhancers integrate the contributions of multiple classes of transcription factors (TFs) to orchestrate the myriad spatio-temporal gene expression programs that occur during development. A molecular understanding of enhancers with similar
Brian W Busser +6 more
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Finite phylogenetic complexity and combinatorics of tables [PDF]
Algebra & Number Theory, 2017 We prove that the phylogenetic complexity -- an invariant introduced by Sturmfels and Sullivant -- of any finite abelian group is finite.
Michałek, Mateusz, Ventura, Emanuele
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Comparison of metaheuristics to measure gene effects on phylogenetic supports and topologies
BMC Bioinformatics, 2018 Background A huge and continuous increase in the number of completely sequenced chloroplast genomes, available for evolutionary and functional studies in plants, has been observed during the past years.
Régis Garnier +5 more
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On the Combinatorics of Rooted Binary Phylogenetic Trees [PDF]
Annals of Combinatorics, 2003 This paper studies the subtree pruning and regrafting (SPR) operation on rooted phylogenetic trees: a subtree is pruned by deleting an edge and it is regrafted by inserting it into another edge. In unrooted trees the size of SPR-related neighborhood is dependent on the topology of the tree, and it was determined by \textit{B.
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Homologous vs. homocratic neurons: revisiting complex evolutionary trajectories. [PDF]
Front Cell Dev Biol, 2023 Moroz LL, Romanova DY.
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Basic Phylogenetic Combinatorics.— Andreas Dress, Katharina T. Huber, Jacobus Koolen, Vincent Moulton, and Andreas Spillner. [PDF]
Systematic Biology, 2012 openaire +1 more source
The Systems Measurement of Mammalian Biotas, Part Two. [PDF]
Life (Basel), 2023 Smith CH, Georges P, Nguyen N.
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Explicit solution of divide-and-conquer dividing by a half recurrences with polynomial independent term. [PDF]
PLoS One, 2022 Coronado TM, Mir A, Rosselló F.
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An evolution strategy approach for the balanced minimum evolution problem. [PDF]
Bioinformatics, 2023 Gasparin A +3 more
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