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Quantifying phylogenetic beta diversity: distinguishing between 'true' turnover of lineages and phylogenetic diversity gradients. [PDF]

open access: yesPLoS ONE, 2012
The evolutionary dissimilarity between communities (phylogenetic beta diversity PBD) has been increasingly explored by ecologists and biogeographers to assess the relative roles of ecological and evolutionary processes in structuring natural communities.
Fabien Leprieur   +5 more
doaj   +10 more sources

Phylogenetic diversity and biodiversity indices on phylogenetic networks [PDF]

open access: yesMathematical Biosciences, 2018
In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their ...
Fischer, Mareike, Wicke, Kristina
core   +3 more sources

The phylogenetic diversity of metagenomes. [PDF]

open access: yesPLoS ONE, 2011
Phylogenetic diversity--patterns of phylogenetic relatedness among organisms in ecological communities--provides important insights into the mechanisms underlying community assembly.
Steven W Kembel   +3 more
doaj   +6 more sources

Global patterns of taxonomic and phylogenetic diversity of flowering plants: Biodiversity hotspots and coldspots

open access: yesPlant Diversity, 2023
Species diversity of angiosperms (flowering plants) varies greatly among regions. Geographic patterns of variation in species diversity are shaped by the interplay of ecological and evolutionary processes.
Hong Qian, Jian Zhang, Meichen Jiang
doaj   +3 more sources

Prioritizing phylogenetic diversity captures functional diversity unreliably [PDF]

open access: yesNature Communications, 2018
An ongoing conservation question is if we can maintain functional diversity by optimizing for preservation of phylogenetic diversity. Here, Mazel et al.
Florent Mazel   +10 more
doaj   +8 more sources

Phylogenetic Diversity and the Greedy Algorithm [PDF]

open access: yesSystematic Biology, 2005
Given a phylogenetic tree with leaves labeled by a collection of species, and with weighted edges, the "phylogenetic diversity" of any subset of the species is the sum of the edge weights of the minimal subtree connecting the species. This measure is relevant in biodiversity conservation where one may wish to compare different subsets of species ...
Mike A Steel
exaly   +3 more sources

Phylogenetic Resolution and Quantifying the Phylogenetic Diversity and Dispersion of Communities

open access: yesPLoS ONE, 2009
Conservation biologists and community ecologists have increasingly begun to quantify the phylogenetic diversity and phylogenetic dispersion in species assemblages. In some instances, the phylogenetic trees used for such analyses are fully bifurcating, but in many cases the phylogenies being used contain unresolved nodes (i.e. polytomies).
Nathan G Swenson
exaly   +5 more sources

The robustness of phylogenetic diversity indices to extinctions. [PDF]

open access: yesJ Math Biol, 2022
Abstract Phylogenetic diversity indices provide a formal way to apportion evolutionary history amongst living species. Understanding the properties of these measures is key to determining their applicability in conservation biology settings.
Manson K.
europepmc   +3 more sources

Quantifying the difference between phylogenetic diversity and diversity indices. [PDF]

open access: yesJ Math Biol
AbstractPhylogenetic diversity is a popular measure for quantifying the biodiversity of a collection Y of species, while phylogenetic diversity indices provide a way to apportion phylogenetic diversity to individual species. Typically, for some specific diversity index, the phylogenetic diversity of Y is not equal to the sum of the diversity indices of
Bordewich M, Semple C.
europepmc   +4 more sources

Environmental determinants of phylogenetic diversity in vernal pool habitats [PDF]

open access: yesEcology and Evolution
Phylogenetic diversity offers critical insights into the ecological dynamics shaping species composition and ecosystem function, thereby informing conservation strategies.
Brandon Hendrickson
doaj   +2 more sources

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