Results 121 to 130 of about 280,348 (263)
HybSuite: An integrated pipeline for hybrid capture phylogenomics from reads to trees
Applications in Plant Sciences, EarlyView.Abstract Premise Hybrid capture sequencing (Hyb‐Seq) is a widely used approach in phylogenomics, providing efficient access to targeted genomic regions. However, deriving high‐quality phylogenetic trees from raw sequencing reads requires extensive bioinformatics processing, which increases complexity, the risk of errors, and challenges in file ...
Yu‐Xuan Liu +8 more
wiley +1 more source
Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data. [PDF]
Genome Res, 2023 Zhang L, Bass HW, Irianto J, Mallory X.
europepmc +1 more source
Dissecting discordance of mitochondrial and nuclear phylogenetic trees in insects
Crop HealthThe mitochondrial and nuclear genomes present distinct inheritance and genomic structural characteristics. Although both genomes have been widely used for phylogenetic tree reconstruction, topological discordances between trees inferred from ...
Xianfeng Mi +3 more
doaj +1 more source
tanggle: An R package for the visualization of phylogenetic networks
Applications in Plant Sciences, EarlyView.Abstract Premise Phylogenetic trees depict evolutionary relationships among taxa. However, they are strictly bifurcating structures that do not take into account several types of evolutionary events such as horizontal gene transfer, hybridization, or introgression. Although the development of new methods in phylogenetic networks has recently increased,
Klaus Schliep +6 more
wiley +1 more source
Applications in Plant Sciences, EarlyView.Abstract Premise Advances in long‐read sequencing offer new possibilities to investigate haplotype diversity across multiple genes in plants and other taxa through multi‐locus, long‐read amplicon sequencing (multi‐locus LRAS). Despite this progress, there is a notable absence of dedicated bioinformatics pipelines for assembling diploid haplotypes of ...
Ayodele Oluwaseyi Fakoya +4 more
wiley +1 more source
Applications in Plant Sciences, EarlyView.Abstract Premise DNA barcoding for timber species identification requires comprehensive reference datasets, informative DNA barcodes, and cost‐effective protocols. We developed a workflow leveraging Hyb‐Seq (target capture sequencing and genome skimming) to address these challenges, and we tested it on four genera from the mahogany family (Meliaceae ...
Sidonie Bellot +14 more
wiley +1 more source
GPTree Cluster: phylogenetic tree cluster generator in the context of supertree inference. [PDF]
Bioinform Adv, 2023 Koshkarov A, Tahiri N.
europepmc +1 more source
The Anatomical Record, EarlyView.Abstract The oval window (OW) is an opening connecting the inner and middle ear. Its area has been shown to consistently scale with body mass (BM) in primates, and has been used alongside semi‐circular canal (SCC) size to differentiate Homo sapiens and fossil hominins, including Paranthropus robustus.
Ruy Fernandez, José Braga
wiley +1 more source
Variation in parrot jaw musculature
The Anatomical Record, EarlyView.Interspecific morphological differences in some superficial jaw muscles of parrots. Abstract Psittaciformes, the order encompassing parrots and their relatives, are highly diverse and generally known for having a strong beaks used for multiple behaviors. The muscles related to the masticatory apparatus should reflect this functional complexity; however,
Ana Carolina L. Faillace +3 more
wiley +1 more source