Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. [PDF]
Sci Rep, 2017 AbstractThe past few years have witnessed a paradigm shift in molecular systematics from phylogenetic methods (using one or a few genes) to those that can be described as phylogenomics (phylogenetic inference with entire genomes). One approach that has recently emerged is phylo-transcriptomics (transcriptome-based phylogenetic inference).
Washburn JD +8 more
europepmc +4 more sources
Robust information from phylogenetic trees? [PDF]
Nature Precedings, 2010 AbstractTraditional information criteria approaches can lead to misleading model choice in comparative phylogenetics. I present both these weaknesses and a more robust comparison by likelihood ratio. I then discuss a new class of models to capture the transition process between evolutionary regimes.
Carl Boettiger
openaire +4 more sources
Expression and co-location of prohibitin genes in salt-tolerance QTLs in rice (Oryza sativa)
The Indian Journal of Agricultural Sciences, 2020 Prohibitin proteins are involved in diverse biological functions including cell cycle regulation, mitochondrial activity, apoptosis, hormonal signalling and so on.
Rakesh Bhowmick +3 more
doaj +2 more sources
Erratum: Ksak: a high-throughput tool for alignment-free phylogenetics [PDF]
Frontiers in Microbiology, 2023 Frontiers Production Office
doaj +2 more sources
Phylogenomics and classification of Notropis and related shiners (Cypriniformes: Leuciscidae) and the utility of exon capture on lower taxonomic groups [PDF]
PeerJ, 2022 North American minnows of the Shiner Clade, within the family Leuciscidae, represent one of the most taxonomically complex clades of the order Cypriniformes due to the large number of taxa coupled with conserved morphologies.
Carla Stout +4 more
doaj +2 more sources
Distribution and Phylogeny of Grapevine fanleaf virus in Vineyards of Khorasan Razavi Province Based on Coat Protein Region [PDF]
Majallah-i ḥifāẓat-i giyāhān, 2022 Introduction: Virus and virus-like diseases cause intensive damage in vineyards all over the world. Grapevine fanleaf virus (GFLV) is one of the most economic important viruses infecting grapevine worldwide.
S. Gharouni +2 more
doaj +1 more source
Ksak: A high-throughput tool for alignment-free phylogenetics
Frontiers in Microbiology, 2023 Phylogenetic tools are fundamental to the studies of evolutionary relationships. In this paper, we present Ksak, a novel high-throughput tool for alignment-free phylogenetic analysis. Ksak computes the pairwise distance matrix between molecular sequences,
Xuemei Liu +9 more
doaj +1 more source
Data in Brief, 2021 A 4-nitrophenol-degrading bacterial strain PNP was isolated from pesticide-contaminated soil collected from Lucknow. Strain PNP utilized 0.5 mM 4-nitrophenol as its carbon source and degraded it completely within 24 h with stoichiometric release of ...
Pankaj Kumar Arora +7 more
doaj +1 more source
Guangdong nongye kexue, 2022 【Objective】The study is conducted to identify the viral pathogen of Ipomoea purpurea (L.) with yellow vein in Jingzhou, Hubei Province, and the results will provide theoretical basis for the effective prevention and control of this disease.【Method】One I.
Wandi LUO +5 more
doaj +1 more source
Phyllosphere microbiology with special reference to diversity and plant genotype [PDF]
, 2008 The phyllosphere represents the habitat provided by the aboveground parts of plants, and on a global scale supports a large and complex microbial community.
Adams +111 more
core +1 more source