Identification of direct residue contacts in protein-protein interaction by message passing
, 2009 Understanding the molecular determinants of specificity in protein-protein interaction is an outstanding challenge of postgenome biology. The availability of large protein databases generated from sequences of hundreds of bacterial genomes enables ...
Altschuh +29 more
core +2 more sources
Deep Learning for Metagenomic Data: using 2D Embeddings and Convolutional Neural Networks
, 2017 Deep learning (DL) techniques have had unprecedented success when applied to images, waveforms, and texts to cite a few. In general, when the sample size (N) is much greater than the number of features (d), DL outperforms previous machine learning (ML ...
Chevaleyre, Yann +4 more
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Silencing Sl-EBF1 and Sl-EBF2 expression causes constitutive ethylene response phenotype, accelerated plant senescence, and fruit ripening in tomato [PDF]
, 2010 The hormone ethylene regulates a wide range of plant developmental processes and EBF (EIN3-binding F-box) proteins were shown to negatively regulate the ethylene signalling pathway via mediating the degradation of EIN3/EIL proteins.
Bouzayen, Mondher +6 more
core
, 2015 Self/non-self recognition in ciliates relies on signaling proteins (pheromones) synthesized in association with a genetic mating-type mechanism, that regulates the cell switching between the growth (mitotic) and sexual (mating) stages of the life cycle.
ALIMENTI, Claudio +2 more
openaire +1 more source
Layers in the Fabric of Mind: A Critical Review of Cognitive Ontogeny [PDF]
, 2006 The essay is critically examines the conceptual problems with the influential modularity model of mind. We shall see that one of the essential characters of modules, namely informational encapsulation, is not only inessential, it ties a knot at a crucial
Nagarjuna, G.
core
Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function [PDF]
Several genome-wide studies demonstrated that alternative splicing (AS) significantly increases the transcriptome complexity in plants. However, the impact of AS on the functional diversity of proteins is difficult to assess using genome-wide approaches.
Busscher-Lange, J. +5 more
core +2 more sources
Monitoring potentially pathogenic protists in sewage sludge using Metataxonomics. [PDF]
Food Waterborne Parasitol, 2023 Rozo-Montoya N +2 more
europepmc +1 more source
Molecular evidence in identifying parents of Garcinia mangostana L. [PDF]
, 2012 The obligate apomicts Garcinia mangostana L. (Clusiaceae) was described from Malaysia and hypothesized to have originated from the natural hybridization between G. malaccensis and G. hombroniana. One of the parents, i.e. G.
Abdullah, Nur Ashikin Psyquay +2 more
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INDEPENDENT ORIGINATION OF FLORAL ZYGOMORPHY, A PREDICTED ADAPTIVE RESPONSE TO POLLINATORS: DEVELOPMENTAL AND GENETIC MECHANISMS [PDF]
, 2016 Observations of floral development indicate that floral organ initiation in pentapetalous flowers more commonly results in a medially positioned abaxial petal (MAB) than in a medially positioned adaxial petal (MAD), where the medial plane is defined by ...
Bukhari, Ghadeer, Zhang, Wenheng
core +1 more source
An alternative marginal likelihood estimator for phylogenetic models [PDF]
, 2010 Bayesian phylogenetic methods are generating noticeable enthusiasm in the field of molecular systematics. Many phylogenetic models are often at stake and different approaches are used to compare them within a Bayesian framework. The Bayes factor, defined
Arima, Serena, Tardella, Luca
core +1 more source