Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree
Molecular Biology and Evolution, 2018 Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods.
Yi Guan, Guangchuang Yu, Lam Ty
exaly +2 more sources
Full-length 16S rRNA amplicon sequencing reveals the variation of epibiotic microbiota associated with two shrimp species of Alvinocarididae: possibly co-determined by environmental heterogeneity and specific recognition of hosts [PDF]
PeerJ, 2022 Shrimps of the family Alvinocarididae, endemic species to deep sea chemosynthetic ecosystems, harbor epibiotic microbes on gills which probably play important roles in the survival of the shrimps.
Min Hui +3 more
doaj +2 more sources
Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea [PDF]
PeerJ, 2022 Echinoids are an important component in benthic marine environments, which occur at all depths from the shallow-water hard substrates to abyssal depths.
Shao’e Sun, Ning Xiao, Zhongli Sha
doaj +2 more sources
Using PhyloSuite for molecular phylogeny and tree‐based analyses
iMeta, 2023 Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced researchers, conquering the large number of software programs required for a multilocus‐based phylogenetic reconstruction can be somewhat daunting and time‐consuming ...
Chuan-Yu Xiang +8 more
semanticscholar +1 more source
Review of the genus Loimia Malmgren, 1866 (Annelida, Terebellidae) from China seas with recognition of two new species based on integrative taxonomy [PDF]
PeerJ, 2020 Specimens of the genus Loimia (Annelida, Terebellidae) deposited in the Marine Biological Museum of the Chinese Academy of Sciences (MBMCAS) together with materials newly collected from China seas were examined.
Weina Wang +3 more
doaj +2 more sources
A review of the common crab genus Macromedaeus Ward, 1942 (Brachyura, Xanthidae) from China Seas with description of a new species using integrative taxonomy methods [PDF]
PeerJ, 2022 Macromedaeus is one of the most common xanthid genera in shallow waters of the Indo-West Pacific. In this study, we describe a new species, Macromedaeus hainanensis sp. nov., and report on two newly recorded species, M. quinquedentatus (Krauss, 1843) and
Ziming Yuan, Wei Jiang, Zhongli Sha
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bioRxiv, 2021 Multiple sequence alignments are widely used to infer evolutionary relationships, enabling inferences of structure, function, and phylogeny. Standard practice is to construct one alignment by some preferred method and use it in further analysis; however,
Robert C. Edgar
semanticscholar +1 more source
Tabanids as possible pathogen vectors in Senegal (West Africa)
Parasites & Vectors, 2020 Background Species of the Tabanidae are potent vectors of human and animal diseases, but they have not been thoroughly investigated to date. In Senegal (West Africa), little information is available on these dipterans.
Mohamed Lamine Keita +4 more
doaj +1 more source
Diversity, 2022 The investigations of the molecular components of eye development and phototransduction in deep-sea species are important to elucidate the mechanism of their adaptation to dim light.
Min Hui +3 more
doaj +1 more source
Scientific Reports, 2022 The deep sea (> 200 m) is considered as the largest and most remote biome, which characterized by low temperatures, low oxygen level, scarce food, constant darkness, and high hydrostatic pressure.
Shao’e Sun, Ning Xiao, Zhongli Sha
doaj +1 more source