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Editorial: Microbial Taxonomy, Phylogeny and Biodiversity [PDF]

, 2019
The great diversity of microbial life is the remaining majorreservoir of unknown biologicaldiversity on Earth. To understand this vast, but largely unperceived diversity with its untappedgenetic, enzymatic and industrial potential, microbial systematics ...
Balboa, Sabela, Romalde, Jesús L., Ventosa Ucero, Antonio   +2 more
core   +2 more sources

Deciphering the Urinary Microbiota Repertoire by Culturomics Reveals Mostly Anaerobic Bacteria From the Gut

Frontiers in Microbiology, 2020
Human urine was considered sterile for a long time. However, 416 species have been previously cultured, including only 40 anaerobic species. Here, we used culturomics, particularly those targeting anaerobes, to better understand the urinary microbiota ...
Grégory Dubourg, Aurélie Morand, Aurélie Morand, Fatima Mekhalif, Fatima Mekhalif, Raphael Godefroy, Raphael Godefroy, Alice Corthier, Alice Corthier, Abdourahamane Yacouba, Abdourahamane Yacouba, Ami Diakite, Ami Diakite, Florent Cornu, Marina Cresci, Samy Brahimi, Samy Brahimi, Aurélia Caputo, Eric Lechevallier, Michel Tsimaratos, Valérie Moal, Valérie Moal, Jean-Christophe Lagier, Didier Raoult   +23 more
doaj   +1 more source

Spatial and temporal phylogeny of border disease virus in pyrenean chamois (Rupicapra p. Pyrenaica) [PDF]

, 2016
Border disease virus (BDV) affects a wide range of ruminants worldwide, mainly domestic sheep and goat. Since 2001 several outbreaks of disease associated to BDV infection have been described in Pyrenean chamois (Rupicapra pyrenaica pyrenaica) in Spain ...
Cabezón, Oscar, Cavallero, Serena, Ebranati, Erika, Fernández Sirera, Laura, Lanfranchi, Paolo, Lavín, Santiago, Luzzago, Camilla, Marco, Ignasi, Rosell, Rosa, Rossi, Luca, Veo, Carla, Zehender, Gianguglielmo   +11 more
core   +8 more sources

A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer

, 2005
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gene loss, in addition to branch lengths in the phylogeny. The likelihood for
A.B. Simonson, B. Boussau, B. Snel, B. Snel, B.E. Dutilh, B.G. Mirkin, C. Pál, C.G. Kurland, D.H. Huson, E. Belda, E.A. Herniou, E.D. Green, E.J. Deeds, E.L.L. Sonnhammer, E.V. Koonin, F. Delsuc, F. Tekaia, G.D.P. Clarke, G.P. Karev, G.P. Karev, G.P. Karev, I.K. Jordan, J. Lin, J.A. Lake, J.O. Korbel, J.P. Gogarten, J.T. Herbeck, K.H. Wolfe, M. Csűrös, M. Pellegrini, M.G. Montague, M.W. Hahn, R.L. Tatusov, S. Karlin, S. Yang, S.T. Fitz-Gibbon, T. Pupko, V. Kunin, V. Kunin, W. Feller, W.J. Reed, X. Gu, Y. Boucher, Y.I. Wolf   +43 more
core   +2 more sources

Biodiversity of Nematodes from Coral Reef Sediments in the South China Sea Based on eDNA Metabarcoding

Diversity
Coral reef ecosystems in the South China Sea are one of the globally important marine biodiversity hotspots. However, there are few studies on nematode biodiversity in coral reef sediments.
Lei An, Aiyang Wang, Zheng Zhang, Xiaoliang Ren, Zhongli Sha   +4 more
doaj   +1 more source

Ciliate Environmental Diversity Can Be Underestimated by the V4 Region of SSU rDNA: Insights from Species Delimitation and Multilocus Phylogeny of Pseudokeronopsis (Protist, Ciliophora)

Microorganisms, 2019
Metabarcoding and high-throughput sequencing methods have greatly improved our understanding of protist diversity. Although the V4 region of small subunit ribosomal DNA (SSU-V4 rDNA) is the most widely used marker in DNA metabarcoding of eukaryotic ...
Zifeng Zhan, Ju Li, Kuidong Xu
doaj   +1 more source

Usurpativirus massiliensis, a new giant virus related to clandestinovirus

Virology Journal
Giant virus discovery in 2003 revolutionized the virus paradigm. In 2015, we introduced a new host, Vermamoeba vermiformis, that led to the discovery of Faustovirus, Orpheovirus and two giant viruses (Clandestinovirus and a faustovirus) having distinct ...
Julien Andreani, Jean-Pierre Baudoin, Léana Laumier, Lucile Pinault, Alice Chanteloup, Philippe Colson, Bernard La Scola   +6 more
doaj   +1 more source

Nutritional and Behavioral Intervention for Long‐Term Childhood Acute Leukemia Survivors With Metabolic Syndrome

Pediatric Blood &Cancer, EarlyView.
ABSTRACT Purpose Metabolic syndrome (MetS) is a common complication in survivors of childhood acute lymphoblastic and myeloid leukemia (AL), and a major risk factor for premature cardiovascular disease, type‐2‐diabetes, and metabolic dysfunction‐associated steatotic liver disease (MASLD).
Visentin Sandrine, Béliard Sophie, Renard Cécile, Caussy Cyrielle, Hamidou Zeinab, Romano David, Gacem Mélanie, Petit Arnaud, Saultier Paul, Borentain Patrick, Michel Gérard   +10 more
wiley   +1 more source

Cell and Animal Models for SARS-CoV-2 Research

Viruses, 2022
During the last two years following the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic, development of potent antiviral drugs and vaccines has been a global health priority.
Eloïne Bestion, Philippe Halfon, Soraya Mezouar, Jean-Louis Mège   +3 more
doaj   +1 more source

The MedSupport Multilevel Intervention to Enhance Support for Pediatric Medication Adherence: Development and Feasibility Testing

Pediatric Blood &Cancer, EarlyView.
ABSTRACT Introduction We developed MedSupport, a multilevel medication adherence intervention designed to address root barriers to medication adherence. This study sought to explore the feasibility and acceptability of the MedSupport intervention strategies to support a future full‐scale randomized controlled trial.
Elizabeth G. Bouchard, Hital Patel, Paula C. Vincent, Justine Kahn, Kira Bona, Thai Hoa Tran, Elisa M. Rodriguez, Kristopher Attwood, Kara M. Kelly   +8 more
wiley   +1 more source