Results 261 to 270 of about 614,762 (328)

Creating and sharing reproducible research code the workflowr way. [PDF]

F1000Res, 2019
Blischak JD, Carbonetto P, Stephens M.
europepmc   +1 more source

Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word. [PDF]

JAMIA Open, 2020
Welty LJ, Rasmussen LV, Baldridge AS, Whitley EW.   +3 more
europepmc   +1 more source

Detecting homologous recombination deficiency for breast cancer through integrative analysis of genomic data

Molecular Oncology, EarlyView.
This study develops a semi‐supervised classifier integrating multi‐genomic data (1404 training/5893 validation samples) to improve homologous recombination deficiency (HRD) detection in breast cancer. Our method demonstrates prognostic value and predicts chemotherapy/PARP inhibitor sensitivity in HRD+ tumours.
Rong Zhu, Katherine Eason, Suet‐Feung Chin, Paul A. W. Edwards, Raquel Manzano Garcia, Richard Moulange, Jia Wern Pan, Soo Hwang Teo, Sach Mukherjee, Maurizio Callari, Carlos Caldas, Stephen‐John Sammut, Oscar M. Rueda   +12 more
wiley   +1 more source

A database for reproducible manipulation research: CapriDB – Capture, Print, Innovate

, 2017
Florian T. Pokorny, Yasemin Bekiroglu, Karl Pauwels, Judith Bütepage, Clara Scherer, Danica Kragić   +5 more
openalex   +1 more source

The Riffomonas Reproducible Research Tutorial Series. [PDF]

J Open Source Educ, 2018
Schloss PD.
europepmc   +1 more source

Evaluation of KRAS and NRAS mutations in metastatic colorectal cancer: an 8‐year study of 10 754 patients in Turkey

Molecular Oncology, EarlyView.
This nationwide study evaluated KRAS and NRAS mutations in 10 754 Turkish patients with metastatic colorectal cancer. The results revealed a mutation frequency of 51.1%, with 46.6% having KRAS mutations, 4.5% having NRAS mutations, and 48.5% being wild‐type for both.
Gozde Kavgaci, Izzet Akiva, Yavuz Hakan Ozon, Hakan Berkil, Huseyin Karadayi, Omer Dizdar, Suayib Yalcin   +6 more
wiley   +1 more source

Suitable reporting for the reproducible research: an added value in the analysis of proteomics data

, 2017
Eugenio Del Prete, Angelo Facchiano, Aldo Profumo, Claudia Angelini, Paolo Romano   +4 more
openalex   +1 more source

Pragmatic considerations for fostering reproducible research in artificial intelligence. [PDF]

NPJ Digit Med, 2019
Carter RE, Attia ZI, Lopez-Jimenez F, Friedman PA.   +3 more
europepmc   +1 more source

Reproducible research practices, openness and transparency in health economic evaluations: study protocol for a cross-sectional comparative analysis. [PDF]

BMJ Open, 2020
Catalá-López F, Caulley L, Ridao M, Hutton B, Husereau D, Drummond MF, Alonso-Arroyo A, Pardo-Fernández M, Bernal-Delgado E, Meneu R, Tabarés-Seisdedos R, Repullo JR, Moher D.   +12 more
europepmc   +1 more source

Landscape of BRAF transcript variants in human cancer

Molecular Oncology, EarlyView.
We investigate the annotation of BRAF variants, focusing on protein‐coding BRAF‐220 (formerly BRAF‐reference) and BRAF‐204 (BRAF‐X1). The IsoWorm pipeline allows us to quantify these variants in human cancer, starting from RNA‐sequencing data. BRAF‐204 is more abundant than BRAF‐220 and impacts patient survival.
Maurizio S. Podda, Danilo Tatoni, Gianluca Mattei, Alberto Magi, Romina D'Aurizio, Laura Poliseno   +5 more
wiley   +1 more source