Results 61 to 70 of about 459 (145)

Algal symbiont genera but not coral host genotypes correlate to stony coral tissue loss disease susceptibility among Orbicella faveolata colonies in South Florida

Frontiers in Marine Science
Stony coral tissue loss disease (SCTLD) has spread throughout the entirety of Florida’s Coral Reef (FCR) and across the Caribbean, impacting at least 30 coral species.
Allison M. Klein, Alexis B. Sturm, Ryan J. Eckert, Brian K. Walker, Karen L. Neely, Joshua D. Voss   +5 more
doaj   +1 more source

The Host Coral Bleaching Response Viewed Through the Lens of Multi‐Omics

BioEssays, Volume 48, Issue 1, January 2026.
Coral bleaching is driven by multiple inputs, with heat stress and/or high irradiance being most important. The bleaching response is multifactorial with host animal species/strain and algal symbiont genotypes being critical features. Omics readout of heat stress responses includes gene expression, proteomics, metabolite, and SNP data with transcript ...
Debashish Bhattacharya, Shrinivas Nandi, Erin E. Chille, Miriam Arroyo, Timothy G. Stephens   +4 more
wiley   +1 more source

mstudiva/SCTLD-resistance-genomics: Extraction metadata and bioinformatics pipelines for analysis of WGS/2bRAD data for Orbicella faveolata

, 2023
<p>Release associated with the submission of the FDEP final report for the project: Strategic Integration of Stony Coral Disease Resistance into Coral Reproduction and Restoration Practices to Recover Florida's Coral Reef</p ...
Benjamin Young, Michael-Studivan
core   +1 more source

NCBI accession numbers for RNAseq data from five coral species experimentally exposed to Stony Coral Tissue Loss Disease (SCTLD) at the University of the Virgin Islands in 2019

, 2022
Dataset: NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLDRaw RNA sequence data were obtained from a disease transmission experiment carried out at the University of the Virgin Islands in which five reef ...
Mydlarz, Laura
core   +1 more source

Unveiling Multi‐Scale Architectural Features in Single‐Cell Hi‐C Data Using scCAFE

Advanced Science, Volume 12, Issue 23, June 20, 2025.
scCAFE is a deep learning framework designed to identify multi‐scale 3D genome architectural features from single‐cell Hi‐C data without dense imputation. It predicts chromatin loops, TAD‐like domains, and A/B compartments, enabling efficient characterization of organization at the single‐cell level. scCAFE also identifies marker loop anchors, offering
Fuzhou Wang, Jiecong Lin, Hamid Alinejad‐Rokny, Wenjing Ma, Lingkuan Meng, Lei Huang, Jixiang Yu, Nanjun Chen, Yuchen Wang, Zhongyu Yao, Weidun Xie, Ka‐Chun Wong, Xiangtao Li   +12 more
wiley   +1 more source

Education and Research: A Symbiosis to Better Understand a Novel Coral Disease

Frontiers in Marine Science, 2021
Ongoing ecological events, such as new and emerging diseases, provide an important platform for education and research. Field courses and undergraduate research projects can be critical to assisting students with learning scientific skills and career ...
Deanna M. Soper
doaj   +1 more source

Coral Restoration in the Omics Era: Development of Point‐of‐Care Tools for Monitoring Disease, Reproduction, and Thermal Stress

BioEssays, Volume 47, Issue 6, June 2025.
Shown are different multi‐omics approaches that are used to identify potential biomarkers of coral health and disease. The integration of these data streams, using cutting‐edge molecular diagnostic technologies, including colorimetric dipsticks, lateral flow assays, and colorimetric LAMP (loop‐mediated isothermal amplification), holds the promise to ...
Erin E. Chille, Timothy G. Stephens, Shrinivas Nandi, Haoyu Jiang, Michael J. Gerdes, Olivia M. Williamson, Alexander Neufeld, Phanor Montoya‐Maya, Debashish Bhattacharya   +8 more
wiley   +1 more source

Multi‐year evaluation of rearing techniques for three sexually propagated Caribbean corals in a restoration setting

Restoration Ecology, Volume 33, Issue 4, May 2025.
In response to declining coral populations worldwide, conservation groups are increasingly applying restoration strategies to bolster abundance and diversity, including sexual propagation of corals. Collection and fertilization of coral gametes as well as larval rearing and settlement have been successful.
Emily N. Nixon, Alexandra N. Gutting, Sophie Cook, Linda Wegley Kelly, Ashlee Lillis   +4 more
wiley   +1 more source

Ex situ treatment enhances survival and recovery from stony coral tissue loss disease in Caribbean corals

Frontiers in Marine Science
Caribbean coral reefs have experienced significant genetic loss from the effects of stony coral tissue loss disease (SCTLD). Since its emergence in 2014, SCTLD has spread from Florida to the Caribbean, affecting at least 25 species of scleractinian ...
Gregory Pelose, Gregory Pelose, Johanna Calle-Triviño, Ariadna León, Stephanie Schopmeyer, Victor Galván, Austin Stoner, Cullin Burdett, Macarena Blanco-Pimentel, Macarena Blanco-Pimentel   +9 more
doaj   +1 more source

Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning

Environmental Microbiology, Volume 26, Issue 9, September 2024.
Using a combination of extensive field sampling, highly accurate ensemble machine learning and tank‐based transmission experiments, we employ 16S rRNA gene surveys to identify two candidate pathogens likely causing white band disease in critically endangered staghorn and elkhorn corals.
Jason D. Selwyn, Brecia A. Despard, Miles V. Vollmer, Emily C. Trytten, Steven V. Vollmer   +4 more
wiley   +1 more source