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Aligning a DNA sequence with a protein sequence
Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97, 1997We develop several algorithms for the problem of aligning DNA sequence with a protein sequence. Our methods account for frameshift errors, but not for introns in the DNA sequence. Thus, they are particularly appropriate for comparing a cDNA sequence that suffers from sequencing errors with an amino acid sequence or a protein sequence database.
Zheng Zhang 0004 +2 more
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Characteristic Sequences for DNA Primary Sequence
Journal of Chemical Information and Computer Sciences, 2002A DNA sequence can be identified with a word over an alphabet N = [A, C, G, T]. Characteristic sequences of a DNA sequence are given in term of classifications of bases of nucleic acids. Using the characteristic sequences, we construct a set of 2 x 2 matrices to represent DNA primary sequences, which are based on counting of the frequency of occurrence
Ping-an He 0001, Jun Wang
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Spencer sequence and variational sequence
Acta Applicandae Mathematicae, 1995The aim of this paper is to revisit the construction of the variational sequence existing within the formal calculus of variations in order to stabilize the order of jets involved and to establish a link with the dual of the Spencer sequence existing within the formal theory of systems of PDE.
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Sequence-to-Sequence Self Calibration
2002We present a linear method for self-calibration of a moving rig when no correspondences are available between the cameras. Such a scenario occurs, for example, when the cameras have different viewing angles, different zoom factors or different spectral ranges.
Lior Wolf, Assaf Zomet
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Generalization of GMW sequences and No sequences
IEEE Transactions on Information Theory, 1996Generalizations of GMW sequences (the characteristic functions of Gordon, Mills and Welch difference sets) and families of No sequences are defined. If \(\alpha\) is an element of order \(2^n -1\) while the integers \(n, m_1, \dots, m_d\) and \(1\leq r_1\leq 2^{m_1}, \dots, 1\leq r_s\leq 2^{m_d}\) satisfy \(m_1 |m_2, m_2, |m_3, \dots, m_d|n\) and ...
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Sequence-to-sequence recursiveness
Information Processing Letters, 1975Giorgio Germano +1 more
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