Results 141 to 150 of about 5,904 (177)

Aligning Non-Overlapping Sequences

International Journal of Computer Vision, 2002
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Yaron Caspi, Michal Irani
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Constructing Aligned Sequence Blocks

Journal of Computational Biology, 1994
This paper presents an efficient method for constructing aligned blocks (i.e., gap-free multiple alignments) from a set of pairwise alignments. The method is more sensitive than some earlier block-constructing methods for detecting conserved sequence regions.
Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang 0004, Ross C. Hardison   +4 more
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Aligning Sequences to Structures

2007
Most newly sequenced proteins are likely to adopt a similar structure to one which has already been experimentally determined. For this reason, the most successful approaches to protein structure prediction have been template-based methods. Such prediction methods attempt to identify and model the folds of unknown structures by aligning the target ...
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On global sequence alignment

Bioinformatics, 1994
We present a dynamic programming algorithm for computing a best global alignment of two sequences. The proposed algorithm is robust in identifying any of several global relationships between two sequences. The algorithm delivers a best alignment of two sequences in linear space and quadratic time.
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Sequence Alignment with Tandem Duplication

Journal of Computational Biology, 1997
Algorithm development for comparing and aligning biological sequences has, until recently, been based on the SI model of mutational events which assumes that modification of sequences proceeds through any of the operations of substitution, insertion or deletion (the latter two collectively termed indels). While this model has worked fairly well, it has
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Parametric Sequence Alignment with Constraints

Constraints, 2001
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Sequence Alignment

2022
This chapter focuses on comparing sequences using alignment. Sequence alignment is the operation that consists of matching two or more sequences, in order to highlight their similarity, whether it is local or global. If the alignment is given, then computing a score is a relatively simple task.
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Alignment of base sequences

Nature, 1984
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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton

Journal of Molecular Biology, 2000
Jaap Heringa, Des Higgins, Cedric Notredame   +2 more
exaly  

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Briefings in Bioinformatics, 2019
Kazutaka Katoh, John Rozewicki, Katoh Kazutaka   +2 more
exaly