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Comparison of musical sequences
Computers and the Humanities, 1990Concepts from the theory of sequence comparison are adapted to measure the overall similarity or dissimilarity between two musical scores. A key element is the notion of consolidation and fragmentation, different both from the deletions and insertions familiar in sequence comparison, and from the compressions and expansions of time warping in automatic
Mongeau, Marcel, Sankoff, David
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A multiple sequence comparison method
Bulletin of Mathematical Biology, 1993This article presents a new method for the comparison of multiple macromolecular sequences. It is based on a hierarchical sequence synthesis procedure that does not require any a priori knowledge of the molecular structure of the sequences or the phylogenetic relations among the sequences.
Wong, A. K. C. +2 more
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Sequence comparison by dynamic programming
Biometrika, 1975Gordon (1973) considered the comparison of two ordered sequences of objects. Quite often, objects in one sequence cannot be identified with objects in the other sequence, but resemble them to a greater or lesser degree. Assuming that a measure of similarity between all pairs of objects can be defined, we consider that the insertion of an object in one ...
Delcoigne, A., Hansen, P.
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Nanopore Sequencing Techniques: A Comparison of the MinKNOW and the Alignator Sequencers
2023Whole genome and transcriptome analyses represent powerful tools. Despite improvements in sequencing methodology, whole transcriptome analyses are still tedious, especially for methodologies producing long reads. Here, we compare the sequence data analysis software MinKNOW and our tool Alignator.
Oeck, Sebastian +2 more
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2009
The evolution of methods which capture genetic sequence data has inspired a parallel evolution of computational tools which can be used to analyze and compare the data. Indeed, much of the progress in modern biological research has stemmed from the application of such technology.
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The evolution of methods which capture genetic sequence data has inspired a parallel evolution of computational tools which can be used to analyze and compare the data. Indeed, much of the progress in modern biological research has stemmed from the application of such technology.
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Large-Scale Sequence Comparison
2016There are millions of sequences deposited in genomic databases, and it is an important task to categorize them according to their structural and functional roles. Sequence comparison is a prerequisite for proper categorization of both DNA and protein sequences, and helps in assigning a putative or hypothetical structure and function to a given sequence.
Devi, Lal, Mansi, Verma
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Sequence comparison of pigeon circoviruses
Research in Veterinary Science, 2008The genome sequences of eight pigeon circoviruses (PiCV) were determined and compared with four previously published sequences. The viruses compared were from the USA, five European countries, China and Australia and included PiCVs from racing, feral, ornamental and meat pigeons and a Senegal dove (Streptopelia senegalensis).
Todd D +9 more
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A New Combinatorial Approach to Sequence Comparison
Theory of Computing Systems, 2005zbMATH Open Web Interface contents unavailable due to conflicting licenses.
MANTACI, Sabrina +3 more
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Finding anchors for genomic sequence comparison
Proceedings of the eighth annual international conference on Computational molecular biology - RECOMB '04, 2004Recent sequencing of the human and other mammalian genomes has brought about the necessity to align them, to identify and characterize their commonalities and differences. Programs that align whole genomes generally use a seed-and-extend technique, starting from exact or near-exact matches and selecting a reliable subset of these, called anchors, and ...
Ross Lippert +4 more
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