Results 11 to 20 of about 767,319 (297)
Nucleic Acids Research, 2022 DAVID is a popular bioinformatics resource system including a web server and web service for functional annotation and enrichment analyses of gene lists. It consists of a comprehensive knowledgebase and a set of functional analysis tools. Here, we report
H Clifford Lane, Weizhong Chang
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GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis
Nucleic Acids Research, 2019 Introduced in 2017, the GEPIA (Gene Expression Profiling Interactive Analysis) web server has been a valuable and highly cited resource for gene expression analysis based on tumor and normal samples from the TCGA and the GTEx databases.
Zefang Tang, Boxi Kang, Zemin Zhang
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Deciphering key features in protein structures with the new ENDscript server
Nucleic Acids Research, 2014 ENDscript 2 is a friendly Web server for extracting and rendering a comprehensive analysis of primary to quaternary protein structure information in an automated way.
Xavier Robert, Patrice Gouet
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Dali server: conservation mapping in 3D
Nucleic Acids Research, 2010 Our web site (http://ekhidna.biocenter.helsinki.fi/dali_server) runs the Dali program for protein structure comparison. The web site consists of three parts: (i) the Dali server compares newly solved structures against structures in the Protein Data Bank
Liisa Holm
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Dali server: structural unification of protein families
Nucleic Acids Research, 2022 Protein structure is key to understanding biological function. Structure comparison deciphers deep phylogenies, providing insight into functional conservation and functional shifts during evolution.
Liisa Holm
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dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Nucleic Acids Research, 2018 Complex carbohydrates of plants are the main food sources of animals and microbes, and serve as promising renewable feedstock for biofuel and biomaterial production.
Han Zhang, Le Huang, Zhenglu Yang
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The HHpred interactive server for protein homology detection and structure prediction
Nucleic Acids Research, 2005 HHpred is a fast server for remote protein homology detection and structure prediction and is the first to implement pairwise comparison of profile hidden Markov models (HMMs).
Johannes Söding, Andrei N Lupas
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The FoldX web server: an online force field
Nucleic Acids Research, 2005 FoldX is an empirical force field that was developed for the rapid evaluation of the effect of mutations on the stability, folding and dynamics of proteins and nucleic acids. The core functionality of FoldX, namely the calculation of the free energy of a
Joost Schymkowitz +2 more
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LigParGen web server: an automatic OPLS-AA parameter generator for organic ligands
Nucleic Acids Research, 2017 The accurate calculation of protein/nucleic acid–ligand interactions or condensed phase properties by force field-based methods require a precise description of the energetics of intermolecular interactions.
Leela S Dodda +2 more
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Nucleic Acids Research, 2017 The PharmMapper online tool is a web server for potential drug target identification by reversed pharmacophore matching the query compound against an in-house pharmacophore model database.
Xia Wang, Yihang Shen, Shiliang Li
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