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Current Protocols in Protein Science, 2018
AbstractSequence similarity searching has become an important part of the daily routine of molecular biologists, bioinformaticians and biophysicists. With the rapidly growing sequence databanks, this computational approach is commonly applied to determine functions and structures of unannotated sequences, to investigate relationships between sequences,
Gang, Hu, Lukasz, Kurgan
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AbstractSequence similarity searching has become an important part of the daily routine of molecular biologists, bioinformaticians and biophysicists. With the rapidly growing sequence databanks, this computational approach is commonly applied to determine functions and structures of unannotated sequences, to investigate relationships between sequences,
Gang, Hu, Lukasz, Kurgan
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WIREs Computational Molecular Science, 2011
AbstractSimilarity searching is one of the traditional and most widely applied approaches in chemical and pharmaceutical research to select compounds with desired properties from databases. The computational efficiency of many (but not all) similarity search techniques has further increased their popularity as compound databases began to rapidly grow ...
Dagmar Stumpfe, Jürgen Bajorath
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AbstractSimilarity searching is one of the traditional and most widely applied approaches in chemical and pharmaceutical research to select compounds with desired properties from databases. The computational efficiency of many (but not all) similarity search techniques has further increased their popularity as compound databases began to rapidly grow ...
Dagmar Stumpfe, Jürgen Bajorath
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Similarity Searching Using Reduced Graphs.
ChemInform, 2003Reduced graphs provide summary representations of chemical structures. In this work, the effectiveness of reduced graphs for similarity searching is investigated. Different types of reduced graphs are introduced that aim to summarize features of structures that have the potential to form interactions with receptors while retaining the topology between ...
Valerie J, Gillet +2 more
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Journal of Popular Music Studies, 2022
Throughout the twentieth and twenty-first centuries regulations on expert testimony have sought to minimize the impact of disagreeing experts. Yet, disagreements between forensic musicologists still play a large role in contemporary music copyright decisions.
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Throughout the twentieth and twenty-first centuries regulations on expert testimony have sought to minimize the impact of disagreeing experts. Yet, disagreements between forensic musicologists still play a large role in contemporary music copyright decisions.
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Similarity Searching Using BLAST
2009Similarity searches are an essential component of most bioinformatic applications. They form the bases of structural motif identification, gene identification, and insights into functional associations. With the rapid increase in the available genetic data through a wide variety of databases, similarity searches are an essential tool for accessing ...
Kit J, Menlove +2 more
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Proceedings of the 20th ACM international conference on Information and knowledge management, 2011
Given a (large) set of objects and a query, similarity search aims to find all objects similar to the query. A frequent approach is to define a set of base similarity measures for the different aspects of the objects, and to build light-weight similarity indexes on these measures. To determine the overall similarity of two objects, the results of these
Dustin Lange, Felix Naumann
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Given a (large) set of objects and a query, similarity search aims to find all objects similar to the query. A frequent approach is to define a set of base similarity measures for the different aspects of the objects, and to build light-weight similarity indexes on these measures. To determine the overall similarity of two objects, the results of these
Dustin Lange, Felix Naumann
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2008
With genome sequencing projects producing huge amounts of sequence data, database sequence similarity search has become a central tool in bioinformatics to identify potentially homologous sequences. It is thus widely used as an initial step for sequence characterization and annotation, phylogeny, genomics, transcriptomics, and proteomics studies ...
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With genome sequencing projects producing huge amounts of sequence data, database sequence similarity search has become a central tool in bioinformatics to identify potentially homologous sequences. It is thus widely used as an initial step for sequence characterization and annotation, phylogeny, genomics, transcriptomics, and proteomics studies ...
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2004
There are many applications for similarity search in time series data of which the following are just a small sample. 1. In finance, a trader may be interested in finding pairs of stocks that move similarly, perhaps with some lag. 2. In music, a person may want to find a song that is similar to one that he can hum. 3.
Dennis Shasha, Yunyue Zhu
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There are many applications for similarity search in time series data of which the following are just a small sample. 1. In finance, a trader may be interested in finding pairs of stocks that move similarly, perhaps with some lag. 2. In music, a person may want to find a song that is similar to one that he can hum. 3.
Dennis Shasha, Yunyue Zhu
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Efficient Algorithms for Similarity Search
Journal of Combinatorial Optimization, 2001zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Rajasekaran, S. +6 more
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