Results 71 to 80 of about 17,927 (312)

MethylCoder: software pipeline for bisulfite-treated sequences [PDF]

Bioinformatics, 2011
Abstract Motivation: MethylCoder is a software program that generates per-base methylation data given a set of bisulfite-treated reads. It provides the option to use either of two existing short-read aligners, each with different strengths. It accounts for soft-masked alignments and overlapping paired-end reads.
Brent, Pedersen, Tzung-Fu, Hsieh, Christian, Ibarra, Robert L, Fischer   +3 more
openaire   +2 more sources

Tumor‐stromal crosstalk and macrophage enrichment are associated with chemotherapy response in bladder cancer

FEBS Open Bio, EarlyView.
Chemoresistance in bladder cancer: Macrophage recruitment associated with CXCL1, CXCL5 and CXCL8 expression is characteristic of Gemcitabine/Cisplatin (Gem/Cis) Non‐Responder tumors (right side) while Responder tumors did not show substantial tumor‐stromal crosstalk (left side). All biological icons are attributed to Bioicons: carcinoma, cancerous‐cell‐
Sophie Leypold, Janik Riese, Lancelot Seillier, Mark Kühnel, Julia Pannhausen, Charlotte O. J. Fröhlich, Christian Martin, Peter Boor, Matthias Saar, Danny D. Jonigk, Nadine T. Gaisa, Michael Rose   +11 more
wiley   +1 more source

Efficient HTTP based I/O on very large datasets for high performance computing with the libdavix library

, 2014
Remote data access for data analysis in high performance computing is commonly done with specialized data access protocols and storage systems. These protocols are highly optimized for high throughput on very large datasets, multi-streams, high ...
C Coarfa, DC Ster van der, F Furano, I Antcheva, I Vukotic, J Heidemann, J Martin, JC Anderson, K Jackson, R Battle, R Buyya, T White   +11 more
core   +1 more source

Microglial dynamics and ferroptosis induction in human iPSC‐derived neuron–astrocyte–microglia tri‐cultures

FEBS Open Bio, EarlyView.
A tri‐culture of iPSC‐derived neurons, astrocytes, and microglia treated with ferroptosis inducers as an Induced ferroptosis model was characterized by scRNA‐seq, cell survival, and cytokine release assays. This analysis revealed diverse microglial transcriptomic changes, indicating that the system captures key aspects of the complex cellular ...
Hongmei Lisa Li, Hiroko Ohmiya, Sou Sakamoto, Masato Yugami, Akiko Oki, Makoto Furusawa, Yan Ling   +6 more
wiley   +1 more source

Flexible and Area-Efficient Codesign Implementation of AES on FPGA

Cryptography
As embedded and IoT systems demand secure and compact encryption, developing cryptographic solutions that are both lightweight and efficient remains a major challenge.
Oussama Azzouzi, Mohamed Anane, Mohamed Chahine Ghanem, Yassine Himeur, Dominik Wojtczak   +4 more
doaj   +1 more source

Low power techniques for video compression [PDF]

, 2002
This paper gives an overview of low-power techniques proposed in the literature for mobile multimedia and Internet applications. Exploitable aspects are discussed in the behavior of different video compression tools.
Marlow, Seán, McGrath, Stephen, Muresan, Valentin, Murphy, Noel, O'Connor, Noel E.   +4 more
core   +1 more source

A Pipeline for Phasing and Genotype Imputation on Mixed Human Data (Parents-Offspring Trios and Unrelated Subjects) by Reviewing Current Methods and Software [PDF]

, 2022
Giulia Nicole Baldrighi, Andrea Nova, Luisa Bernardinelli, Teresa Fazia   +3 more
openalex   +1 more source

Software Pipelining of Nested Loops [PDF]

, 2001
Software pipelining is a technique to improve the performance of a loop by overlapping the execution of several iterations. The execution of a software-pipelined loop goes through three phases: prolog, kernel, and epilog. Software pipelining works best if most of the time is spent in the kernel phase rather than in the prolog or epilog phases. This can
Kalyan Muthukumar, Gautam Doshi
openaire   +1 more source

BMI‐1 modulation and trafficking during M phase in diffuse intrinsic pontine glioma

FEBS Open Bio, EarlyView.
The schematic illustrates BMI‐1 phosphorylation during M phase, which triggers its translocation from the nucleus to the cytoplasm. In cycling cells, BMI‐1 functions within the PRC1 complex to mediate H2A K119 monoubiquitination. Following PTC596‐induced M phase arrest, phosphorylated BMI‐1 dissociates from PRC1 and is exported to the cytoplasm via its
Banlanjo Umaru, Deepak Kumar Mishra, Shiva Senthil Kumar, Hao‐Han Pang, Brendan Devine, Komal Khan, Rachid Drissi   +6 more
wiley   +1 more source

FPGA Acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods

BMC Bioinformatics, 2010
Background Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data.
Bakos Jason D, Zierke Stephanie
doaj   +1 more source