Results 111 to 120 of about 58,956 (207)

Accurate long read mapping using enhanced suffix arrays [PDF]

, 2010
With the rise of high throughput sequencing, new programs have been developed for dealing with the alignment of a huge amount of short read data to reference genomes.
Dawyndt, Peter, De Schrijver, Joachim, Fack, Veerle, Van Criekinge, Wim, Vyverman, Michaël   +4 more
core   +1 more source

Systematics of the New World Rostrate Genus Metaxyphloeus Thomas, 1984 (Coleoptera: Laemophloeidae): Morphological Evidence for Monophyly Supporting a Broader Generic Concept

Austral Entomology, Volume 65, Issue 2, May 2026.
ABSTRACT A morphology‐based MP analysis is undertaken to test the monophyly of the lined flat bark beetle genus Metaxyphloeus Thomas, 1984, as well as to hypothesize its intra‐ and intergeneric evolutionary relationships. Based on the results of the present work, Metaxyphloeus, as currently composed, is hypothesized as a monophyletic assemblage of ...
Matheus Bento
wiley   +1 more source

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees

BMC Bioinformatics, 2019
Background Alternative splicing allows the pre-mRNAs of a gene to be spliced into various mRNAs, which greatly increases the diversity of proteins. High-throughput sequencing of mRNAs has revolutionized our ability for transcripts reconstruction. However,
Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu   +4 more
doaj   +1 more source

Endophytic Biostimulant Pyrroloquinoline Quinone Enhances Banana Growth and Primes Immunity Against Fusarium Wilt

Physiologia Plantarum, Volume 178, Issue 3, May/June 2026.
ABSTRACT Pyrroloquinoline quinone (PQQ) is a redox cofactor derived from prokaryotes that participates in various biological processes involving dehydrogenase enzymes. Previous field trials identified a PQQ‐producing endophyte, Burkholderia seminalis 869T2, which enhances banana growth and reduces Fusarium wilt incidence from 24.5% to 3.4%.
Shih‐Hsun Walter Hung, Man‐Yun Yu, Chia‐Ho Liu, Tsai‐Ching Huang, Jian‐Hau Peng, Nai‐Yun Jang, Chih‐Horng Kuo, Yu‐Liang Yang, Ying‐Ning Ho, En‐Pei Isabel Chiang, Hau‐Hsuan Hwang, Chieh‐Chen Huang   +11 more
wiley   +1 more source

Lightweight and Scalable Intrusion Trace Classification Using Interelement Dependency Models Suitable for Wireless Sensor Network Environment

International Journal of Distributed Sensor Networks, 2013
We present a lightweight and scalable method for classifying network and program traces to detect system intrusion attempts. By employing interelement dependency models to overcome the independence violation problem inherent in the Naive Bayes learners ...
Dae-Ki Kang
doaj   +1 more source

MUMmer4: A fast and versatile genome alignment system.

PLoS Computational Biology, 2018
The MUMmer system and the genome sequence aligner nucmer included within it are among the most widely used alignment packages in genomics. Since the last major release of MUMmer version 3 in 2004, it has been applied to many types of problems including ...
Guillaume Marçais, Arthur L Delcher, Adam M Phillippy, Rachel Coston, Steven L Salzberg, Aleksey Zimin   +5 more
doaj   +1 more source

Alien Trees and Shrubs with the Complements Saksamaa (Germany) and Saksa (German) in Early Written Language and Folklore

Yearbook of Balkan and Baltic Studies
The study of alien species has become more and more relevant today. In particular, the influence of alien species on the local nature is studied, but more and more studies have also begun to appear on how alien species affect the local language and ...
Jüri Viikberg, Heldur Sander, Raivo Kalle   +2 more
doaj   +1 more source

The suffix tree of a tree and minimizing sequential transducers

Theoretical Computer Science, 1995
This paper gives a linear-time algorithm for the construction of the<br />suffix tree of a tree. The suffix tree of a tree is used to obtain an efficient<br />algorithm for the minimization of sequential transducers.
openaire   +3 more sources

Whole-Genome Alignment: Methods, Challenges, and Future Directions

Applied Sciences
Whole-genome alignment (WGA) is a critical process in comparative genomics, facilitating the detection of genetic variants and aiding our understanding of evolution. This paper offers a detailed overview and categorization of WGA techniques, encompassing
Bacem Saada, Tianchi Zhang, Estevao Siga, Jing Zhang, Maria Malane Magalhães Muniz   +4 more
doaj   +1 more source

Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree. [PDF]

IEEE/ACM Trans Comput Biol Bioinform, 2017
Savel D, LaFramboise T, Grama A, Koyuturk M.   +3 more
europepmc   +1 more source